Ailuropoda melanoleuca (giant panda): 100464646
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Entry
100464646 CDS
T01329
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03008
Ribosome biogenesis in eukaryotes
aml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100464646 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
100464646 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100464646 (XRN1)
03009 Ribosome biogenesis [BR:
aml03009
]
100464646 (XRN1)
03016 Transfer RNA biogenesis [BR:
aml03016
]
100464646 (XRN1)
03036 Chromosome and associated proteins [BR:
aml03036
]
100464646 (XRN1)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100464646 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
100464646 (XRN1)
Ribosome biogenesis [BR:
aml03009
]
Eukaryotic type
Pre-60S particles
RNases
100464646 (XRN1)
Transfer RNA biogenesis [BR:
aml03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100464646 (XRN1)
Chromosome and associated proteins [BR:
aml03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100464646 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100464646
NCBI-ProteinID:
XP_019652685
Ensembl:
ENSAMEG00000012538
LinkDB
All DBs
Position
6:6956096..7061490
Genome browser
AA seq
1744 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNYKEKKKSKGQENAICWAALDKNGEEVVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRDTEFTYPSPWPEKFPAIERCCTRYKIISLDAWRVDISKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIASSVLGKSVFVNWP
HLEEARVVGISDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEY
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLTHGSRSETGNQKLTAIVKPQPAVNHYSS
NSSISSGHLGGLNHSPQSLFVPTQVPAKDDDEFCNIWQSLQGSGKVQHFQPALQEKVAVL
PQEISQVTQHHKSGFTDNSVKCQQRKHEPHRKFKEECKSPKTENRLQKMSNKQTLGGPAK
CNVKLLKRNESAEVSENQKVVTGYPNAIDKPNPGIENFLASLNISKENDVQSSHHEEPPS
EDLLSPQSFAMKGTRMLKEILKIDGSDAVDHKNEMKQFGNEGTVSSNRRDEYGPSSQPKQ
NKKLTSYMNKPHSTNEYHNVQSMDHVCWPASSHMPPVSTPVTELSRICSLVGMPQPDFSF
LRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAAFFALQQLGSLGVNFPLPPPVFPNY
PPAVPPRTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHHT
SYSGTMPMAGGMPGGVHNQFIPLQVTKKRVANKKNFESKEAQSSQATPLQTSQPGSSNVT
KVIPQESSSASLKSSQITQPSSLQVEAASQGHSMSSHHKSTPSSSSRRKSRKLAVNFGIS
KPSE
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgccttagtgaagtg
gtgaaagagcatcagattcctgaattcgacaacttgtacctggatatgaatggaatcata
catcagtgttcacatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaggtg
ttcttcatggctgttgatggtgtggctcctagagcaaaaatgaaccagcagcgggggagg
cgttttaggtcagcaaaggaggcagaagacaaaataaaaaaggcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataagtcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagaacataaa
atcatggaatttatcagatccgagaaagcaaaaccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcacgaggcacat
ttctctcttttaagagaagaggtccggtttggtggcaaaaagacacaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagtattgaaagacaagatcacttttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttggtggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagaactacaaggaaaagaaaaaatcaaagggccaggaaaacgccatttgttgggct
gctttagacaaaaatggagaagaagtggtaacttccaaggataatttagaagatgagact
gaagatgatgacctatttgaaacagaatttagacaatataaaagaacatattacatgacg
aagatgggagttgatgtagtgtctgacgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattattatcatggagtgcagtcctggagctggtat
tatccctaccattatgcacctttcctatctgatatccgtaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gctagcaaaaatttacttcctacatgctaccagcacttgatgaccagtgaagactcacca
attatagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtactgataccttttattgatgagaagcgattgttggaagccatggaaaca
tgtaaccactccctcaaaaaggaagaaaggaaaagaaaccaacatagtgagtgcctaatg
tgctggtatgatagagacacagagttcacctacccctcaccatggccagaaaagttccct
gccatagaacgttgttgcacaaggtataaaataatatcattagatgcttggcgtgtagac
ataagcaagaacaaaataaccagggttgaccagaaggcattgtatttctgtggatttcct
accctgaaacacatcaaacataaattttttttgaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttagaaatcttagtgaatgcagaatcagatgaa
cttagtgtagaaaatatagcttcatcagtgcttggaaagtctgtctttgttaattggcct
catcttgaagaagctagagttgttggtatatcagatggagaaactaaattttatctggaa
gaacctccaggaacacagaagctttatttgggaagaactgccccaccatctaaagtggtc
catcttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaatac
tacctaagaagaaaaggaataataataaatgaaacatctgcagttgtatatgctcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacaatgg
tcaaaacaagttcttccttttgtttatcaaactatcgtaaaggacatccgagcttttgac
tcccgtttctccaatatcaaaacattggatgacttgtttcctcctagaagtatggtcttt
atgctgggaaccccctattacggctgcactggagaagttcaggactcaggggatgtgatt
acagaaggtaggattcgtgtggttttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaagaggtacctggatatactaagaaagttggaagtgagtggatgtattca
tctgcagcagaacaacttcttgcagagtacctagagagagctccagaactatttagttat
atagccaaaaacagccaggaggatgtattctatgaagatgacatttggcctggagaaaat
gagaacggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagt
accttgtctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgacagtg
aagccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagat
gcagaatttcgtctctttgaccgtgtggtaaatgtgagagagaacttttcagttccagtt
ggccttcggggcaccatcataggaattaaaggggctaatagagaagccgatgtactattt
gaagtattatttgatgaagaatttcccggaggtttaacaataaggtgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaatcttactcatgggagtcgctctgaaact
ggaaatcagaagttgacagccattgtgaaaccacaaccagctgtgaatcactatagctca
aattcatctatttcttctgggcatttgggaggcctgaaccattccccccagtcacttttt
gttcctactcaagtacctgctaaagatgatgatgaattttgcaacatctggcagtcctta
cagggatctggaaaggttcaacactttcagccagctctacaagagaaggttgcagttcta
cctcaagaaataagtcaagtaactcaacatcataaatctggctttactgacaacagtgtt
aaatgtcagcaaagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagccct
aaaactgagaatcggttacaaaaaatgtcaaataagcagacgcttggagggcctgccaaa
tgtaatgttaagctattgaagagaaatgaaagtgcagaagtctcagaaaaccaaaaggtt
gtgactggttacccaaatgctattgataagcctaatcctggaattgagaactttttagca
tccttgaatatttccaaagaaaatgatgtacagtcatctcatcatgaagagcctccaagt
gaagaccttttgtcaccccagtcatttgctatgaagggaactcggatgcttaaagaaata
ctaaaaattgatggctctgatgctgtggaccataaaaatgaaatgaagcagtttggtaat
gaaggcaccgtttcctctaatagaagagatgaatatggaccttcctcccagcctaaacaa
aataagaaattaacatcttatatgaataagcctcacagtactaacgaataccataatgtt
cagtctatggaccatgtgtgttggcctgcttccagccatatgcctcctgtgtcgacacca
gtaactgaactttctcgaatttgttcgcttgttggaatgccacaaccagatttctccttt
cttagaacaccacagacaatgacagtttgccaggtaaaattatctaatggcttactggtc
catgggccacagtgccattctgaaaatgaagctaaggaaaaagctgcattttttgcttta
caacagttgggctccttaggagtgaatttccctttgcctccaccagtatttccaaattac
cctcctgctgtaccacccagaaccattcctccagtttttcctcaacctactggctgggat
cactatggaagcaacttagcattgggggcagctaatataatgccttcatcatctcacctc
tttggctccatgccatggggaccaccagtgccagttcctgggaagccatttcatcatact
tcatattctgggaccatgcccatggctgggggaatgccaggtggtgtgcacaatcagttc
atacctctacaggttactaaaaaaagggttgcaaataaaaagaactttgaaagtaaggag
gcccagagttctcaagctaccccacttcagactagccagccagggtcttccaatgtcacc
aaagtgattccacaggagagttcatcagcttccttaaagtcctctcagattactcaacct
tcatctttacaagttgaagctgcctcccaaggccatagtatgtcttctcatcacaagtca
acaccaagctcttcttcaagaagaaaatcaagaaaactggccgtcaattttggcatttct
aaaccttctgaataa
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integrated database retrieval system
