Ailuropoda melanoleuca (giant panda): 100465415
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Entry
100465415 CDS
T01329
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04120
Ubiquitin mediated proteolysis
aml04137
Mitophagy - animal
aml04141
Protein processing in endoplasmic reticulum
aml05012
Parkinson disease
aml05014
Amyotrophic lateral sclerosis
aml05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100465415 (PRKN)
04120 Ubiquitin mediated proteolysis
100465415 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100465415 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
100465415 (PRKN)
05014 Amyotrophic lateral sclerosis
100465415 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
100465415 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aml04131
]
100465415 (PRKN)
04121 Ubiquitin system [BR:
aml04121
]
100465415 (PRKN)
03029 Mitochondrial biogenesis [BR:
aml03029
]
100465415 (PRKN)
Enzymes [BR:
aml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
100465415 (PRKN)
Membrane trafficking [BR:
aml04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100465415 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
100465415 (PRKN)
Xenophagy
Other xenophagy associated proteins
100465415 (PRKN)
Ubiquitin system [BR:
aml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
100465415 (PRKN)
Mitochondrial biogenesis [BR:
aml03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
100465415 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
IBR_1
IBR
Motif
Other DBs
NCBI-GeneID:
100465415
NCBI-ProteinID:
XP_034525316
Ensembl:
ENSAMEG00000015876
LinkDB
All DBs
Position
10:complement(103083993..104126627)
Genome browser
AA seq
408 aa
AA seq
DB search
MSCDLDQQSIVHVVLRPWREGQEREATRGDSPQKAMDGPEREPESLTRVDLSSSILPAHS
VGLAVILNNDYERTLPAGRPAGRGTYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLA
QGPSCWDDVLIPNRMTGECQSANCPGTAAEFFFKCGAHPTSDKETSVALNLITTNSRDIT
CITCTDIRSPVLVFQCNHRHVICLDCFYLYCVTRLNDRQFIHDPQLGYSLPCVAGCPNSL
IKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPSPGCGAGLLPEPGVREVTCEGGSG
LGCGFVFCRDCKEAYHEGECGTLFEASGAATQAYRVDEKAAEQARWEEASKETIKKTTKP
CPRCHVPVEKNGGCMHMKCPQPQCQLEWCWACSCEWNRACMGDHWFDV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtgacctggatcagcagagcatcgttcatgtcgtgctgagaccctggcgtgaa
ggccaagaaagggaggccactcgaggggacagcccacaaaaggccatggatggcccggag
agagagcctgagagcttgacgcgcgtggacctcagcagctccatccttcccgcccactcg
gtgggtctggctgtgatcctgaacaacgactatgagaggaccctgcctgccggaaggcca
gcaggtagaggaacctacaacagcttttatgtttattgcaaaggcccctgtcaaagagta
cagccaggaaaactccgcgtgcagtgcagcacctgccgacaggcaacgctcaccttggcc
cagggtccatcttgctgggacgatgtcttaatcccaaaccggatgaccggtgaatgccaa
tctgcaaactgccctgggactgcagccgaatttttctttaaatgtggagcacatccgacc
tccgacaaggaaacgtcagtagctttgaacctgatcacaacaaacagtcgagacatcacc
tgcataacgtgtaccgacatcaggagccctgtcctggtttttcagtgcaatcaccgccac
gtgatttgcttagactgtttctacttatactgtgtgacaagacttaatgaccggcagttt
atccatgaccctcagcttggctactctctgccttgtgtggctggctgccccaactccctg
attaaagagctccatcacttcaggattctgggagaagagcagtataaccggtaccagcaa
tatggcgctgaggagtgtgtgctacagatggggggtgtgctgtgccccagccccggctgc
ggagcagggctgcttcctgagccaggcgtgagggaggtcacttgtgaagggggcagcggt
ctgggctgtgggttcgtcttctgccgggactgtaaggaagcgtaccatgaaggtgaatgt
ggtaccctctttgaagcctcgggagccgctactcaggcttacagagttgatgagaaggcc
gcggagcaagctcggtgggaagaggcttccaaagaaacaatcaagaaaaccaccaagccc
tgtccccgttgccatgtgcccgtggaaaaaaatggaggatgcatgcacatgaagtgtcca
cagccccagtgccagctggagtggtgctgggcctgcagctgtgagtggaaccgcgcctgc
atgggggaccactggttcgacgtgtag
DBGET
integrated database retrieval system
