Ailuropoda melanoleuca (giant panda): 100465848
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Entry
100465848 CDS
T01329
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100465848 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100465848 (XAB2)
03041 Spliceosome [BR:
aml03041
]
100465848 (XAB2)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100465848 (XAB2)
Spliceosome [BR:
aml03041
]
Complex B
Other components
Prp19-related factors
100465848 (XAB2)
Complex C
100465848 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_2
TPR_12
TPR_8
TPR_19
Suf
ARM_TT21
ARM_TT21_C
TPR_15
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
100465848
NCBI-ProteinID:
XP_034513597
Ensembl:
ENSAMEG00000008491
LinkDB
All DBs
Position
4:5867924..5886219
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKSXXXXXA
QLEEEWGLARHAMAVYERATRAVEPAQRYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggcccgagcggccggacctcgttttcgaggaagag
gacctcccctatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacattgagttcaaacaaggtgccccgaagcccaggctcaaccagctgtatgagcgagcg
ctgaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcacgccgggcg
caggtgaagcatcgctgcgtgactgaccctgcctatgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcataagatgccccgtctgtggctggactactgccagttcctg
atggaccagggccgtgtcacgcacacccgccgcacgtttgaccgcgccctccgggccctg
cccatcacacagcactctcgcatctggcccctgtacctgcgcttcctccggtcccacccg
ctgcctgagacggcggtgcggggctaccggcgcttcctcaagctcagccccgagagcgca
gaggagtacatcgaatacctcaagtccagcgaccggctggatgaagccgcacagcgcctg
gccaccgtggtcaatgacgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtacagtcgctcaatgtg
gacgccatcatccgcgggggcctcacccgcttcactgaccagctgggcaagctctggtgc
tcactggctgactattacatccgcagcggccacttcgagaaggctcgagatgtgtacgag
gaggccatccgcaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctacgcc
cagtttgaggagagcatgattgccgccaagatggagacagcctcggagctggggcgggag
gaggaagatgatgtggacctggagctgcgcctggcgcgcttcgagcagctcatcggccgg
cggcccctgctgctcaacagcgtcctgctacgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgcccccgggagatcatcaacacatacacggag
gctgtgcagacggtggaccctttcaaggcgacaggcaagccccacacgctgtgggtggca
ttcgccaagttttacgaggacaacgggcagctggatgacgcccgcatcatcctggagaag
gccaccaaggttagcttcaagcaggtggacgacctggccagcgtgtggtgtgagtgcggc
gagctcgagctccggcacgagaactatgaccaggccttgcggttgctgcggaaggccacc
gcgctgcctgcccgccgagccgagtacttcgacggctcggagcccgtgcagaaccgtgta
tacaagtcgctgaaggtgtggtcgatgctcgccgacctagaggagagcctgggcaccttc
cagtccaccaaggccgtgtacgaccgcatcctggacctgcgcattgccacgccccagatc
gtcatcaactatgccatgttcctggaggagcacaagtactttgaggaaagcttcaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaaattcatcgcccgctatgggggccgcaagctggagcgagcgcgggacctcttc
gaacaggcgctggacggctgccctcccaaatacgccaagagtnnnnnnnnnnnnnacgcg
cagctggaggaggagtggggcctggcccggcacgccatggccgtgtacgagcgcgccacc
cgggccgtggagccggcgcagcggtacgacatgttcaacatctacatcaagcgcgcggcc
gagatctacggcgtcacccacacccgcggcatctaccagaaggccatcgaggtgctgtcg
gacgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaggctcggcgag
atcgaccgggcgcgcgctatctacagcttctgctcccagatctgtgacccccggaccacc
ggggctttctggcaaacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggattcgccggagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtccggcagcgccacgggtactgtgtccgacctggcc
cccgggcagagcggcatggatgacatgaagctgctggagcagcgggcggagcagctggcg
gccgaggccgagcgcgaccagccgccccgggcgcagagcaagatcctgtttgtgaggagc
gacgcctcccgggaggagctggccgagctggcacagcaggccaacccggaggagatcgag
ctgggggaggacgaggatgaggacgagatggacctggagcccaacgaggtacggctggag
cagcagagcgtgccggccgccgtgttcgggagcctgaaggaggactga
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