Ailuropoda melanoleuca (giant panda): 100466109
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Entry
100466109 CDS
T01329
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03020
RNA polymerase
aml03420
Nucleotide excision repair
aml05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100466109 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
100466109 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100466109 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aml03021
]
100466109 (POLR2A)
03400 DNA repair and recombination proteins [BR:
aml03400
]
100466109 (POLR2A)
Enzymes [BR:
aml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100466109 (POLR2A)
Transcription machinery [BR:
aml03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100466109 (POLR2A)
DNA repair and recombination proteins [BR:
aml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100466109 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100466109
NCBI-ProteinID:
XP_002924473
Ensembl:
ENSAMEG00000016265
UniProt:
G1MCZ1
LinkDB
All DBs
Position
17:2269360..2292077
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAVLKPRPLWTGKQIFSLIVPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggcggt
atcaaataccccgagacgacagagggcggccgccccaagcttggggggctgatggacccg
aggcagggggtgatcgagcggactggccgctgccagacctgtgcaggaaacatgacagag
tgtcccggccactttggccacattgagctggccaaacctgtgtttcacgtgggcttcctg
gtgaagacgatgaaagtgttgcgctgcgtctgcttcttctgctccaagctgctcgtggac
tctaacaacccaaagatcaaggacatcctggccaagtccaaggggcagcccaagaagcgg
ctgacacacgtgtacgacctgtgcaagggcaagaacatctgcgagggcggagaggagatg
gacaacaagttcggcgtggagcagccggagggcgacgaggacttgaccaaagagaagggc
cacggtggctgcgggcggtaccagccccggatccggcgctcgggcctggagctgtacgcc
gagtggaagcacgtcaacgaggactcccaggagaaaaagatcctgctgagtcccgagcga
gtgcacgagatcttcaagcgcatctcggacgaggagtgtttcgtgctgggcatggagccc
cgctacgcgcggcccgagtggatgatcgtcaccgtgctgcccgtgcccccgctctctgtg
cggcctgccgtggtgatgcagggctctgcccgcaaccaggacgacctcactcacaagctg
gcggacatcgtgaagatcaacaaccagctgcggcgcaacgagcagaacggcgcggcggcc
cacgtcatcgcggaggatgtgaagcttctccagttccacgtggccaccatggtggacaac
gagctgcccggcttgccccgcgccatgcagaagtctgggcgccccctcaagtccctaaag
cagcgcttgaagggcaaggaaggccgggtccgggggaacctgatgggcaagcgagtggac
ttctcggcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggttggcgtg
cctcgctccatcgccgccaacatgacctttgcggagattgtcacgcctttcaacatcgac
agacttcaggagctggtgcgcagggggaacagccagtacccaggggccaagtacatcatc
cgcgacaatggcgatcggattgacctgcgtttccaccccaagcccagtgatcttcacttg
cagaccggctacaaggtggagcggcacatgtgcgacggagacattgtcatcttcaaccgg
cagccgactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
acttttcgtttaaatctgagtgtgacgacgccgtacaacgctgactttgacggggatgag
atgaacttgcaccttccacagtccctggagacccgggcagagatccaggagcttgctatg
gtgccacgtatgattgtcaccccccagagcaatcgccccgtcatgggcatcgtgcaggac
acgctcacggccgtgcgcaaattcacaaagagagacgtcttcctggagcggggggaggtg
atgaacctgctcatgttcctgtccacatgggacgggaaggtgccgcagccggccgtcctg
aagccgcggcccctctggacgggcaagcagatcttctccctcatcgtcccgggccacatc
aactgcatccgcacgcacagcacccatcccgacgacgaggacagcggtccctacaaacac
atctcccccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctctcggcacgtcggccggctcgctggtccacatctcttacctggagatg
ggccacgacgtcacacggctcttctattccaacattcagaccgtcattaacaactggctt
ctcatcgagggtcataccattggcattggggactccatcgctgactctaagacctaccag
gacattcagaacactattaagaaggccaagcaggatgtgatagaggtcatcgagaaggct
cataacaatgagctggagcccaccccagggaacactctgcggcagacctttgagaaccag
gtgaaccgcattctcaacgatgcccgagacaagactggctcttccgcccagaagtccctg
tctgagtacaacaactttaagtccatggtcgtgtctggggccaaaggttccaagatcaac
atctcccaggtcattgctgtcgtggggcagcagaacgtggagggcaagcggatcccgttt
ggattcaagcaccggactctgcctcacttcatcaaggatgactacgggcccgagagcaga
ggctttgtagagaactcctacctggccggcctcacgcccaccgagttcttcttccatgct
atggggggtcgcgagggacttatcgacacggccgtcaagactgctgagactgggtacatc
cagcggcggctcatcaagtctatggagtcggtgatggtgaagtacgacgccaccgtgcgc
aactccatcaaccaggtggtacagctgcgctatggcgaggatggcctggccggcgagagc
gtcgagttccagaacctggctaccctgaagccatccaacaaggcttttgagaagaagttc
cgtttcgactacaccaacgagagggccctgcggcgcactctgcaggaggacctggtgaag
gatgtcctgagcaacgcgcacattcagaacgagctggagcgggaattcgagcggatgcgt
gaggaccgggaggtgctcagggtcatcttcccaactggcgacagcaaggtggtcctcccc
tgtaacctgctgcgcatgatctggaatgctcagaagatcttccacatcaacccccgcctg
ccctccgacctgcaccccatcaaggtcgtagagggagtcaaggaattgagcaagaagctg
gtgatcgtgaacggggacgaccccctgagccggcaggcgcaggagaacgccacgcttctc
ttcaacatccacttgcggtccacgctgtgctcgcgccgcatggccgaggagttccggctc
agcggggaggccttcgactggctgctcggggagatcgagtccaagttcaaccaagccatc
gcccatcctggggagatggtgggtgccctggctgcacagtccctcggagaaccggccacc
cagatgaccttgaacacctttcactatgctggtgtgtctgccaagaacgtgactctgggt
gtgccccgcctcaaggagctcatcaacatctccaagaagccgaagacaccttcgctcacc
gtcttcctgctgggccagtctgctcgagatgctgagagagccaaggacattctgtgtcgt
ctggagcacacgacattgaggaaggtgaccgccaacacagccatctactacgaccccaac
ccccagagcacggtggtcgcagaggatcaggagtgggtgaacgtctactatgagatgccg
gacttcgacgtggcccgcatctccccgtggcttttgcgggtggagctggaccggaagcac
atgactgaccgaaagctgaccatggagcagattgccgagaagatcaatgccggtttcggc
gatgacttgaactgcattttcaacgacgataacgccgagaagctggtgctccgaatccgc
atcatgaacagcgacgaaaacaagatgcaagaggaagaagaggtggtggacaagatggac
gacgatgttttcctgcgctgcatcgagtccaacatgctgaccgatatgaccctgcagggc
atcgagcagatcagcaaggtgtatatgcacctgccgcagacggacaacaagaagaagatc
attatcacggaggatggggagttcaaggccctgcaggagtggatcctggagacggacggt
gtgagcctgatgcgggtgctgagtgagaaggacgtagaccctgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatcgaagcggtgcggaaggctctggagcgg
gagctgtaccacgtcatctcctttgacggttcctatgtcaattaccgccacttggctctt
ctgtgtgacaccatgacctgtcgcggccatttgatggccatcacccgacatggggtcaac
cgccaggatacgggccctctcatgaagtgctcttttgaggaaacggtggacgtgctgatg
gaggcagccgctcacggagagagcgaccccatgaaaggggtgtctgagaacatcatgctg
ggccagctcgccccggccggcaccgggtgcttcgaccttctgctcgatgcggagaagtgc
aagtacggcatggagatccccaccaacatccccggcttgggggccgctggacccactggc
atgttcttcggctcggcgcccagtcccatgggaggaatctctccggccatgactccctgg
aaccagggcgcaactccagcctatggcgcctggtcccccagtgttgggagtggaatgacc
ccaggggcagccggcttctctcccagcgctgcctcagacgccagcggcttcagccccggg
tactcccctgcctggtctcccacaccaggctccccgggctcccctggcccctcgagcccg
tacatcccctcaccaggtggtgccatgtctcccagctactccccaacatcgcctgcctat
gagcctcgctcccctgggggctatacgcctcagagcccctcttactcccccacgtcgccc
tcctactcccccacctctccatcctactctccaactagtcctaattacagtcccacgtca
cccagctactccccaacttctcccagctactccccgacctcgcctagctactctcccacc
tctcccagctactctccaacctctcccagctactccccaacctctcccagctactctccg
acctctcccagctactccccgacctctcccagctactcgcccacctctcccagctactcc
ccaacctctcccagctactcacccacttctcccagttactcgcccacgtccccgagctac
tcgcccacgtccccgagctactctcccacgtccccgagctattccccgacgtccccgagc
tactcgccaaccagccctaactattctccaaccagtcctaattacaccccgacatcaccc
agctatagcccgacatcacccagttactccccgacaagtcccaactacacacccacgagc
cctaactacagcccaacctctccaagttactctccaacttcacccagctactccccaacc
tcgccaagctactccccgtcaagcccacggtacacaccacagtctcctacctacaccccg
agctcccccagctacagccccagctccccgagctacagcccaacgtcgccgaagtacacc
cccaccagtccctcctacagccccagctccccagagtacaccccaacctcccccaaatat
tcgcctaccagcccaaaatactcgcccacctcccccaagtactcacccaccagccccacc
tactcgcccaccaccccaaagtactccccaacatcccctacttactcgccaacctctccg
gtgtataccccgacctcccccaagtactcgcctactagccccacctactcgcccacctcc
cccaagtactcgcccaccagccccacctactcgcccacctcccccaaaggctctacctac
tcacccacttcccctggctactcgcccaccagtcccacctacagcctcaccagtccggcc
atcagcccggacgacagtgatgaggagaactga
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integrated database retrieval system
