Ailuropoda melanoleuca (giant panda): 100466125
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Entry
100466125 CDS
T01329
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03013
Nucleocytoplasmic transport
aml03015
mRNA surveillance pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100466125 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
100466125 (DDX39B)
03015 mRNA surveillance pathway
100466125 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100466125 (DDX39B)
03041 Spliceosome [BR:
aml03041
]
100466125 (DDX39B)
Enzymes [BR:
aml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100466125 (DDX39B)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100466125 (DDX39B)
Spliceosome [BR:
aml03041
]
Complex C
Other components
EJC/TREX
100466125 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100466125 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100466125
NCBI-ProteinID:
XP_011215034
Ensembl:
ENSAMEG00000009508
UniProt:
G1LSF7
LinkDB
All DBs
Position
5:complement(26693239..26705107)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagaagatgaggtggagaca
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctgaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctatgccaagccaagtcaggcatggggaagacagcagtgtttgtg
ctggccacactgcaacagctggagccagttactggacaggtgtctgtgctggtgatgtgt
cacactcgggagttagcttttcagatcagcaaggagtatgagcgcttctctaaatacatg
cccaacgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatattgttgtggggacccctggccgcatcctcgccctggct
cgaaataagagcctcaatctcaaacacattaaacattttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtcctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctttttggccgaggcatggatattgagcgggtgaacattgccttc
aactatgacatgcctgaggattccgacacctacctgcatcgggtggcccgagcaggtcgg
tttggcactaagggcttggccatcacgtttgtgtcagatgaaaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgcctgatgagatagacatt
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
