Ailuropoda melanoleuca (giant panda): 100468074
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Entry
100468074 CDS
T01329
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100468074 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100468074 (EDC4)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100468074 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
100468074 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
Motif
Other DBs
NCBI-GeneID:
100468074
NCBI-ProteinID:
XP_002918476
Ensembl:
ENSAMEG00000017551
UniProt:
G1MGS5
LinkDB
All DBs
Position
12:63777107..63788578
Genome browser
AA seq
1399 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVPDPLCSGDGT
STNKPGLRAMPPINLQEKQVICLTGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSSQLACLDEAGNLFVWRLALVNGKIQEEILVHIQQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSNHSTWPVRVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRSLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSVSEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHT
THEDFTFGETRPELGSEGLGSSTQGSQPDPRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSTSLQQIAASPSSSSSSSSSSSSSSLTAVSAMSSTSAVDPSLPRPPEELTLSPKLQLD
GSLTMSSSSSLQASPRSLLPSLLPGPADKLTPKAPGQVPTAASALSLELQEVEPLGLPQA
SPSRTRSPDVISSASTALSQDIPEIASEALSRGFVSSAPEGLEPDSMASAASALHLLSPR
PRPGPELGSQLGLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCSSLA
ESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKVPTP
RLPAKDWKTKSSPRASPKLKRKGKKDDGDSAVGSRLMEHQVAEPPEDWPALIWQQQRELA
ELRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQLQEQ
LTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVVTKLTAVEGSMK
ENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINESFR
LGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSSSVRAEVQH
QLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHLDCQ
AQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVLLSLI
QQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHNSLG
KVARRLSLMLHGLVTPSLP
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
cttaagctggaccggcccgcggggggtcccagtgcagagagccagcggccatctaatgcc
tacaatggggatctcaacgggcttcttgtcccagaccccctctgctcaggtgatggtact
tcaacaaacaagcctggtctccgggccatgccacctattaaccttcaggaaaagcaggtc
atctgtctcacaggagatgacagctctacgtgcattgggattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcaagcaaagcccggggcagcaacaaggtgaag
atccagcctgtggccaagtatgactgggaacagaaatactactatggcaacctgattgct
gtgtccaactccttcttggcctatgccattcgggctgccaacaatggctcggcgatggta
cgggtgatcagtgtcagcacttcagagcggaccctgctgaagggcttcacaggcagtgtg
gctgatctggccttcgcacacctcaattcctcacagctggcctgcctggatgaggcaggc
aacctgttcgtgtggcgcttggcactggttaatggcaaaattcaagaggagatcttggtc
cacatccagcagccggagggcacaccactgaaccacttccgcaggatcatctggtgcccc
ttcatcccggaggagagtgaggactgctgtgaggagggcagccccacagtggctctgttg
catgaggaccgggctgaggtgtgggatctggacatgctccgctccaaccacagcacctgg
cctgtgcgtgtcagccaaatcaagcaaggcttcatcgtcgtaaaaggccacagcacctgc
ctgagtgaaggggccctctcacctgatgggactgtcctggctactgcaagccatgatggc
tttgtcaagttctggcagatctacattgaagggcaggacgagccaaggtgtctgcatgaa
tggaagcctcatgatgggcggtccctttcctgcctcttgttctgtgacaaccacaaaaaa
caggaccctgaagtccctttctggaggttcctcatcactggtgctgaccagaatcgggag
ctaaagatgtggtgcacagtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagctcagtgagtgtgccccccagcctcaaggtttgtctggacctctcagcagaa
taccttattctcagcgatgtgcaacggaaggtcctctacgtgatggagctgctgcagaac
caggaggagggccgagcctgcttcagctccgtctcggagttcctgctcacccatcctgtg
ctgagcttcgggatccaggttgtgagtcgctgccgactgcggcacactgaggtgctgcct
gccgaagaggagaatgacagcctaggggctgatgggacccacggagctggtgccatggag
tctgcagccggggtgctcatcaaactcttctgtgtgcatactaaggcattacaggacgtg
cagatccgtttccagccacagctgaaccctgatgtggtggccccgctccccacccacact
acccacgaggacttcacatttggagagactcggcctgaactgggctctgagggcctgggg
tcatctacccaaggctcccagcccgacccccgacgcatagtggagctgcctgcacccgct
gacttcctcagtctgagcagtgagactaagcccaagctgatgacccctgacgccttcatg
acacctagcacctccctgcagcagatcgctgcgtcccccagcagcagcagcagcagcagc
tccagctccagctcctcgtctctcacagctgtgtctgctatgagcagtacctcagccgtg
gacccctccttgcccaggccacctgaggagctgaccttgagccccaagctgcagctggat
ggcagtctgacaatgagcagcagtagcagcctgcaagcaagcccacgcagcctcttgccc
agtctgctcccaggtccagctgacaaactgactcccaaagcacctgggcaggtgcctact
gctgcctctgcgctgtcactggagctgcaggaagtagagcccctggggctaccacaggct
tctcctagccgtacccgctcccctgatgttatctcctcagcttccactgccctgtcccag
gacatccctgagatcgcatctgaggccctgtcccgtggttttgtctcctctgctcctgag
ggtcttgagccagacagtatggcctcggctgcctcagcgctacacctgctatccccacgg
ccccggccagggcctgagcttggctcccagcttggcctggatggaggccctggggatggg
gatcggcatagtaccccttcccttttggaggcagcactgacccaggaggccacagcccct
gacagtcaggtctggcccacggcaccagacattacccgtgagacctgcagcagcctggca
gagagtcccaggaatggcctccaggagaagcacaagagcctggccttccaccgaccacct
tatcacctgctgcagcaacacgacagccaggacgccagtgctgagcaaagtgaccatgat
gatgaagtggctagccttgcctctgctgcaggaggctttggcaccaaagttccgactcca
cggctaccggccaaggactggaagaccaagagttctcctcgagcctcacccaagcttaag
agaaagggcaagaaagatgacggggattcggccgtggggtcccggctcatggagcaccag
gtggcagaacctcctgaggactggccagcactaatttggcaacagcagagagagctggca
gagctgcggcacagccaggaagaattgctacagcgtctttgcacccaacttgaaggcctg
caaagcaccgtcacgggccacgtagaacgcgccctggagtcacggcatgagcaggagcag
cggcggctggagcgggcactggctgaggggcagcagcggggtgggcagctgcaggagcag
ctgacacagcagctgtcccaggcactgtcttcggctgtagcggggcggctggagcgcagc
atacgggatgagatcaagaagacggtgcctccatgtgtctctaggagtctggagccagtg
gcaggccagctgagcaactcagtggtcaccaagctcacagccgtggagggtagcatgaaa
gagaatatctccaagctgctaaagtccaagaacttgacagatgccattgcccgagcagct
gcagacacattacaggggccaatgcaggctgcctaccgtgaagccttccagagtgtggtg
ctgccagcctttgagaagagctgccaggccatgttccaacagatcaatgagagcttccga
ctgggcacgcaagaatacttgcagcagctggagagccacatgaagagcaggaaggcacgt
gaacaggaggcacgggagcccgtgttggcccagctgcggggcctggtcagcacactgcag
ggtgccactgagcagatggcggccaccgtgtccagcagcgttcgggctgaggtgcagcac
cagctgcacgtggctgtgggcagcctgcaggagtccattttagcacaggtacagcgcatt
gttaagggtgaggtgagtgtagcactcaaggagcaacaggccgccgtcacgtctagcatc
atgcaggccatgcgttcagctgctggtacacctgtccccgctgcccacctcgactgccag
gcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggccttccag
caggccctgacagctgctgacctgaacctggtgctgtatgtgtgtgaaactgtggaccca
gggcaggtttttgggcagccaccctgcccactctcccagcctgtgctcctttccctcatc
cagcagctggcctctgaccttggtactcgaactgacctcaagctcagctacctggaagag
gctgtgatgcacctggaccacagtgaccccatcactcgggaccacatgggctccgtcatg
gcccaggtgcgccagaagctcttccagttcctgcaggctgagccacacaactcacttggc
aaagtggcccggcgtctcagcctcatgctgcatggccttgtaacccctagcctcccttag
DBGET
integrated database retrieval system
