Ailuropoda melanoleuca (giant panda): 100468388
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Entry
100468388 CDS
T01329
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aml03000
]
100468388 (RC3H2)
04121 Ubiquitin system [BR:
aml04121
]
100468388 (RC3H2)
Transcription factors [BR:
aml03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100468388 (RC3H2)
Ubiquitin system [BR:
aml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100468388 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
100468388
NCBI-ProteinID:
XP_034520348
Ensembl:
ENSAMEG00000006498
LinkDB
All DBs
Position
7:complement(48885966..48938327)
Genome browser
AA seq
1189 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
GSTETTGKIVPSTNGISNAENSVSQLIPRSTDSTLRALETVKKVGKVGTNGQNATGPSAE
SVTENKIGSPPKTPVSNVAATSAGPSNVGTELNSVPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTSVPLPREPCGHLKTSCEEQIRRKPE
QWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRTDFSESVSGTKFEEDHLSHYSPWS
CGTIGSCINAIDSEPRDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGP
IISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATS
SAHYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDE
GRHLTLNLLSKEIELRNGESDYTEDASDTKPDRDIELELSALDTDEPDGQGEQIEEILDI
QLGISAQNDQLLNGTAVENGHPVQQHQKEPLEQKRQSLGEDHVILEEQKTILPVTSCFSQ
PLPVSISNASCLPITTSVSVGNLILKTHVMSEDKNDFLKPVANGKMVNS
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcttgtccttttgaccagactgccatcaacacagac
attgatgtgcttcctgtcaactttgcacttctccagttagttggagcccaggtaccagat
catcagtcaataaagttaagtaatctaggtgagaacaaacactatgaggttgcaaagaaa
tgtgttgaggatttggcactctacttgaaaccactcagtggcggtaaaggtgtagctagt
ttgaaccagagtgcactgagccgtccaatgcaaaggaaactggtgacgcttgtaaactgt
caactggtggaggaagaaggtcgtgtcagggccatgcgagcagcccgttcacttggagaa
agaactgtaacagaactaatattacagcaccagaatccccagcaattgtctgccaacctg
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaggcc
ttgaagctggtgttgctagcattagaagatggttctgctctctcaaggaaagtactggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcatgttttaaggttaccaaaagggatgaagac
tcttccctgatgcagctaaaggaggaatttcggagttacgaagcattacgcagagaacat
gatgcccaaattgttcatattgctatggaagcaggactccgcatttcacctgagcagtgg
tcctcacttctgtatggtgacttggcacataaatcacacatgcagtctatcattgataag
ctgcagtctccagaatcatttgcaaagagtgtccaggaattgacaattgttttgcaacga
acgggtgacccagctaacttaaatagactgagacctcatttagagcttcttgcaaacata
gaccctaatccagatgctgtttcgccaacttgggagcagctagaaaatgcaatggtagct
gttaaaacagtggttcatggccttgtggacttcatacagaattatagtagaaaaggccat
gagacacctcagcctcagccaaacagcaaatacaagactagcatgtgccgagatctgcgt
cagcaaggagggtgtccccgaggaacaaactgtacttttgcccattctcaggaggagctt
gaaaagtatcgattaaggaacaaaaagatcaatgcaactgtaagaacatttcctcttcta
aataaagttggtgtaaacaacactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaattgttccaagtacaaacggaatttcaaatgcagaa
aacagtgtttcccagctaatcccacgtagtactgacagtacgttaagagctctggagact
gtgaagaaggtggggaaggttggcactaatggtcagaatgctactgggccttctgcagag
tctgtcactgaaaataaaattggctctccacccaagactcctgtaagtaatgtagcggct
acctcagctgggccttctaatgttggaacagagctgaattctgtgcctccaaaatccagc
ccatttataactagagtaccagtatatcctcagcattctgaaaatattcagtattttcaa
gatccaaggactcagataccctttgaagtcccacagtacccacagacaggatactaccca
ccacctccaacggtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagagtcctccctcccacctgcttctatgccatatgctgatcattacagtaca
ttttcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagccgtat
ggaccagttcctccagtaccttctggaatgtatgctcctgtgtacgacagcaggcgcatc
tggcgcccacctatgtaccaacgagatgacattattagaagcaattctttacctccaatg
gatgtgatgcactcgtctgtttatcagacgtctttgcgagaaagatataactcattagat
gggtattattcagtggcttgtcagccaccaagtgagccaaggacaagtgtgcctttacca
agggaaccttgtggtcatttgaagaccagttgcgaggagcagataagaagaaagccagag
cagtgggcacagtaccacactcagaaagcacctcttgtctcttcaactcttcctgtggca
acacagtcaccaacaccaccttctcctctattcagtgtagactttcgcactgatttctct
gagagtgtgagtggtacaaaatttgaagaagatcatctttctcattattctccctggtct
tgtggcaccataggctcctgtataaatgccatcgattcggagcccagagatgtaattgct
aattcaaatgctgtattaatggacctggacagtggagatgttaagagaagagtgcattta
tttgaaacccagagaaggacaaaagaagaagacccaataattccatttagtgatggacct
atcatctcaaaatggggtgcaatttccagatcttcacgtacaggttaccataccacggat
cctgtccaggccactgcttcccaaggaagtgccactaagcctatcagtgtatcagattat
gttccttatgtcaatgctgttgattcaaggtggagttcatatggtaacgaggccacatca
tcagcacactatattgaacgggacagattcattgttactgatttatctggtcatcgaaag
cattccagtactggagaccttttgagcattgaacttcagcaggccaagagtaactcactg
cttcttcagagggaggccaatgctctggccatgcaacagaaatggaattccctggatgaa
ggccgtcaccttaccttaaatcttctaagcaaggaaattgaactgagaaacggagagagt
gattatacagaagatgcaagcgatactaagcctgatagggatattgagttagagctttcg
gcactcgatactgatgaacctgatggacaaggtgaacaaattgaagagatcctggacata
cagcttggtatcagtgctcaaaatgatcagttgctgaatggaacagcagtggaaaatggg
cacccagtccagcagcaccaaaaggagccgctggagcagaagagacagagtttaggtgaa
gaccatgtgattctggaggagcaaaaaacaattctgccggtaacttcttgctttagccag
ccactcccagtgtccattagcaatgcaagttgcctccccatcaccacgtctgtcagtgtt
ggcaacctcattctgaaaactcatgttatgtctgaagataaaaacgactttttaaaacct
gttgcaaatgggaagatggttaacagctga
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