Ailuropoda melanoleuca (giant panda): 100468563
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Entry
100468563 CDS
T01329
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100468563 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aml04131
]
100468563 (VPS8)
Membrane trafficking [BR:
aml04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100468563 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
TPR_Vps41
zf_RING_Vps8_fungal
WD40_CDC20-Fz
zf-RING_11
Clathrin
zf-RING_2
zf-C3H2C3
zf-RING_UBOX
Beta-prop_WDR3_1st
zf-RING_5
Beta-prop_WDR5
GED
zf-C3HC4
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
100468563
NCBI-ProteinID:
XP_011218616
Ensembl:
ENSAMEG00000016845
UniProt:
D2H298
LinkDB
All DBs
Position
1:complement(79029518..79264308)
Genome browser
AA seq
1426 aa
AA seq
DB search
MENEPDHENVEQSLCAKTTEEELNKSFNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVH
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRK
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLERKDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLVGMTPQVMKDLIVHFQDKKLMENVEALIVHMDIT
SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGRTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSAEASPEEEIYPYVRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
DHIEELVSLRPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQELL
QMSPCVTEQFIELLCQFSPSQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDI
HGAFLIMLKRLQSKLQEITHQDEKTKEEFSLKDVEDTMVETIALCQRNSHNLNQQQREAL
WFPLLEAMMAPQKLSGSAAPHLHPEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
QQYKRRQEMADEIIVFSCGHLYHSFCLQNKECTIETEGQTRWTCYKCSSSNKAGKLSENS
SEVKKGKTAPSQVKMSPSCHPSKGDSAIKKAASEPVLDPQQIQAFDQLCHLYRGSSRLAL
LTELSQNRSSESYRPFSGSQSGPAFNSIFQNENFQLQLIPPPVTED
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagaccatgaaaatgtggaacagagcctctgtgccaagactactgaa
gaagagctgaataagtctttcaatcttgaagcttcgctttcaaaattctcttacatagat
ctggacaaggaactggagttcaaaaatgacctgattgatgacaaggagtttgatattcct
caagttgatactcctccaacactggaaagcatactcaatgagactgatgatgaagatgag
tcttttgttcttgaggatcctacattgttaaacattgatactattgattctcactcctat
gatacttcgtctgtggcaagttcagatagtggtgacaggaccaacttaaaaaggaagaag
aaattacctgattctttttcactccatgggtcagttatgcgacattcacttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtggatgctggcttgcctacagcaatt
gcagtgtccagtctgatagctgtgggtacatctcatggattggctttaatatttgatcag
aatcaagctttgcgactctgtctgggtagcactagtgttggaggtcagtatggagccatc
tctgctctcagtatcaacaatgactgctcaagacttctctgtggctttgctaaaggacag
atcacaatgtgggatttagccagtggaaaacttctcagatcaataacagatgctcatcct
ccaggaacagcaatattacatattaagtttacagatgatccaactcttgccatttgtaat
gacagcggaggctctgtttttgaattgacatttaagagagtaatgggagtgagaacatgt
gaatctagatgtctgttcagtggttccaagggggaagtttgctgtattgagcctctccat
tcgaagcctgagttgaaagatcatcccatcacacagttttccttattggccatggcatcc
ttaacaaagatactggtcattggattgaaaccatccttgaaagtgtggatgacttttccc
tatggacggatggatccttccagtgttccattgctggcctggcactttgtggcagtacat
aattatgtgaatcccatgcttgccttctgcagaggagatgttgttcattttctgttggtt
aagagagatgagtctggagcaatacatgtcactaagcaaaagcaccttcacctctactat
gatctcatcaactttacttggataaactcacgcacagttgtgctcttggacagcgtggag
aaattgcatgtgattgatcggcagactcaagaggaattggaaacagtggagatctcggaa
gttcagttggtctataacagcagccatttcaaatccctagccactggaggaaatgttagc
caggcactggctttggttggagagaaggcttgttatcaatccatcagtagctatggtggt
cagatcttttatttggggacaaaatctgtttatgtgatgatgctgagaagctggagagag
agagtggatcatctcctgaaacaagattgtcttacagaagccttggctcttgcatggtct
ttccatgaaggaaaagcaaaagcagtagtgggattatcaggggatgtcagtaagcgaaag
gctgttgttgcagatcggatggtagaaatcctattccactatgcagatcgagctctgaaa
aagtgtccagaccagggaaaaatccaagtgatggagcagcattttcaggacatggtgcct
gtcatcgttgattactgcctgctgttggagcgaaaggatcttttatttagccagatgtat
gacaaactaagtgagaattcagtggccaaaggagtgtttttggagtgccttgagccatat
attttaagtgataaactggtggggatgaccccccaggtaatgaaagacttgattgttcat
ttccaagataaaaagttaatggaaaatgtggaagccctcattgtacatatggatatcacc
agcctagatattcagcaggtagttctcatgtgttgggaaaatcgtctgtatgatgctatg
atctatgtctacaacagaggcatgaatgaatttattagtccaatggagaaacttttcaga
gtcattgctcctcctctgaatgcaggaaggacgctaacagatgagcaagttgttatgggc
aacaagcttcttgtatatattagctgttgtcttgcaggccgagcctatccccttggtgac
atccctgaagatcttgttcccttggttaaaaaccaggtatttgaatttctgattcgcctg
cattcagcagaagcttcccccgaggaagaaatctacccctatgttaggactctgctacat
tttgacacaagagaatttctaaatgtattggcactgacttttgaagattttaaaaatgac
aagcaagctgtagaatatcagcaacgaattgtggatattttgttgaaagttatggtggag
aattccgattttactccctcacaagtagggtgtctctttacattccttgcccggcagctt
gcaaagcctgacaataccttgtttgtaaacagaaccctttttgatcaggtccttgaattc
ctctgtagtcctgatgatgactcccgacactctgaaagacagcaggtccttttagaattg
ctgcaggctggagggatcgttcagtttgaagagagtcggctcatccggatggcagaaaaa
gcagaattctatcaaatttgcgagtttatgtatgaacgagaacatcaatatgacaaaata
attgattgctacttacgggacccgctaagggaggaagaagtctttaactacattcacaat
atcttatccattcctggacacagtgcagaggagaagcagtctgtatggcagaaagcaatg
gatcatatcgaggaacttgtgtccctgaggccctgtaaagctgcagagctggttgccact
cacttttctgaacagattgaaacagtcattaaaaaacttcagaaccaggttttgcttttc
aaatttttgaggagtcttcttgacccaagggaaggtattcatgtaaatcaagagttgctg
cagatgtctccatgtgttacagagcagttcattgagctgttgtgtcagttcagcccaagc
caggttatagagacactgcaggtccttgagtgctaccgcctggaagaaaccatccagatt
acccagaagtatcaacttcatgaagtcactgcctatctattagaaaaaaaaggagatatt
catggtgccttcttaataatgctaaagagactacaaagcaaacttcaagagataacacat
caagatgaaaaaaccaaagaggagttctcactgaaggatgttgaagataccatggtagag
accattgccctttgccagagaaattcacataatttgaaccagcagcaacgagaggcactc
tggtttccattattggaggcaatgatggcccctcagaagctgtctggttcagctgcacct
catctacaccctgaagctctgaaatctttgaccatgcaagttctaaacagcatggcggcg
tttattgcccttccgtcaatcttgcaaagaatcttacaggatccagtttatggaaaagga
aaacttggagaaatccagggacttattctgggaatgttggatacctttaactatgaacaa
accctgctggaaacaactactagccttctaaaccaagacctccattggtcattgtgtaac
ctgagagcttcagtcaccagaggactgaatcccaagcaggattactgctctatatgtttg
cagcagtacaagagacgccaagaaatggctgatgaaatcattgtcttcagctgtggccat
ttgtatcactcattctgtctgcaaaacaaagagtgcaccatagagactgaggggcagacg
agatggacatgctacaaatgcagctcaagtaacaaagcaggaaaattaagtgaaaattca
tctgaagttaagaaggggaagacagccccatcccaggtaaaaatgtctccttcttgtcat
ccatccaaaggagattctgctattaagaaggcagcctcggaacccgtcctggacccacag
caaatccaagcgtttgatcagctttgccatctctaccgaggaagttcccggctggctctc
ctcacagaactctcccagaatcgcagcagcgagagctacaggccattcagtggctcccag
agtggccctgctttcaacagcatcttccagaatgagaatttccagctacagctcattccc
ccacctgtgactgaggactga
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