Ailuropoda melanoleuca (giant panda): 100468613 Help Entry 100468613         CDS       T01329                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism aml  Ailuropoda melanoleuca (giant panda) Pathway aml05014   Amyotrophic lateral sclerosis Brite KEGG Orthology (KO) [BR:aml00001]  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     100468613 (SETX)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:aml03021]     100468613 (SETX) Enzymes [BR:aml01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      100468613 (SETX)     5.6.2.5  RNA 5'-3' helicase      100468613 (SETX) Transcription machinery [BR:aml03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      100468613 (SETX) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 UvrD-helicase AAA_30 AAA_22 nSTAND3 ResIII SLFN-g3_helicase NAT10_TcmA_helicase AAA_16 UvrD_C_2 Motif Other DBs NCBI-GeneID:  100468613 NCBI-ProteinID:  XP_034519638 Ensembl:  ENSAMEG00000004067 LinkDB All DBs Position 7:complement(56592542..56682004) Genome browser AA seq 2946 aa AA seqDB search MSTCSWCTPGGVSTVDFLKRYASKSHSSEFQTADEDLCYCLECVAEYHKARDDLPFLHEV LWELETLRLINHFEKSMKAEIGDDDELYIVDNNGEAQLFDFTGQDFENKLRVPLLEILKY PYLLLHERVNELCVEALCRMEQANCSFQVFDKHPGIYLFLVHPNEMVRRWAILTARSLGK VDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPSHMYDTANYKNYWLG ICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMERQADDDNVDPFWPALHCFMVILDRL GSKVWGQRIDPIEAFQTIINNGSYNKEIQNIRNSSVRTKLEPESYLDDMVTCSQIVYNYN PEKTKKDSGWRSAICPDYCPNMYEEMETLASVLQSDIGQDMRVHNSTFLWFIPFVQSLMD LKDLGVAYIVEVIHHLHSEVKDVLNQTDAMCDKVTEFFLLILVSVIELHRNKKCLHLLWV SSQQWVEAIVKCAKLPTTAFARSSEKSSGNCSKGTAMISSLSLHSMPSNSVQLACVQLIR SLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTTQETHELQTCLKQIIRNIKVKVP QCSTFVDLSPACKSSPASYSKEESEQIERKSNKDLHCLENSSPTFSKEPMKAETYQMQEN ILIKASNTIEEDNEQNYIKDWKLEDHFSAKSCMKKSSKNLFTERAQDQGKVSTGKQKSVK GHCTSRTALQNCTSRNGPERGCDRGIIMSTRLSTDSSTDALEKASTSNEDFSLKDDALGK TSKSKTKARKDEICAKLSHVIKKQHRKSTLINNTGNLDENLTVSNIDSFYSREDSGGQKE DGSMHSLSLDPSGILDDKNGEQKSQNSLLLKKKQLKSEELDIFSSHENSYQIQECHIDDK DLVSFTEVTNTFVKKTSPFKDPVTLLESRDKEISKNTNQMSSHLREQAPGLSPQSDTLTD SQIDRDLHKLSLIAQASVIKFPSDSTQKSSTHLQRRVKDDRRCFLADQNNTGEASWGQII IISDSDEEDDDDEGILGFEKHIKQDKIGIRKECPEQHTSIANTNVEKKLIKEEETKSLLQ FEESDSQFFEFESPCEVFSVWQDQEPEKNSVQENRKNSCSADDITNDWGYETDYVSEEVI KKVAEGIEKHTEPQSTISVGEFCEIEVKKRKRKRLEKPVAKDPPKPSPSDRNEDRSDILN ERGLNENDFKSMDLRTASPSSSVQRDKDTTVSLKKSPPKLRTYSKPIRRVPLSKTPKKTH SDTKKGQNKGSNYISCRTTPAVVPPKKFRQCPEPTSTVEKLGLKKAPRRAFELSQRSLEY LVQLRDHGKTVGVVDTRKKTKLISPQTLSVKNNKKLLTSQDLQMRRQTRPKSQQNRQGLL DYESKDATRAGPCPAQNSDILVPESDGSDDSYKGGTEVIANNTGKPLIKSVSLESEPVKT KYVSQVTDDTCLLNQCAAVVLNGRIPTNEIIVSASADPLGGGDPTVHHLELATLKDGEPE SNSDSEDENIFLTQLDPEDMDLCSQMESGNEKLIEVVHGKDTAQVEDSVSRPQSESWSST KCKYKDCIETPKNQGEYCSKHCEATAADEDVFRKPGLPLAASKPSRPSTAKIFSSSSTSR IANLSKSLESTSALPPALKNKSNGAQAVLKVPQPASLLSPKSVGEVKSLCNVLRPQTPNN SNRQGYKLTFGESKSFSASSPVNILLSSQSISDTFVKEVLKWKYEMFLNFDQCGPPASLC QSISRPVPVRFQDCGDYFNVFFPLMVLNTFETVAQEWISSPNKEKFYQLHLRKFPGDYKK YWEFVVHLEECELAKQFHPKENDLVFLVPERQNGEKKDTERNHMQDLREYHCGYIHKFRR TSVMRNGKSECSLSIQTQDNLPVNLNELVKCIVISSLVTTQRKLKAMSLLSGRNQLARAV LNPNPMDFCTKDLLTTTSERIIAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPG TGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKE KCKDKKNPLGNCGDINLVRLGPEKSINNEVLKFSLDSQVNHRMKKDLPSHVQEMHRRKEF LDHQLDELSRQRALCRGGREIQRQELDEKIAKVSKERQELASKIKEVQGRPQKTQSIIIL ESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLTPLIHRCNKLILVG DPKQLPPTVISMKAQEYGYDQSMMARFYKLLEDNVEHNMIGRLPILQLTVQYRMHPDICL FPSNYVYNRSLKTNRQTETNRCSSDWPFQPYLVFDVGDGSERRDNDSYVNVQEIKLVMEI IKLIKDKRRDVTFRNIGIITHYKAQKMMIQKDLDKEFDRKGPAEVDTVDGFQGRQKDCVI VTCVRANTMQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGA IIKTCDRNYRHDAAKILKLKPVLQRSLTHPPAAAPEASRPQGGLPGNKLDSEFAKTSFTS SLYHTPSDSRESTGTVTTKDPERPLIQDWLRDPRLLRRMGLDPEAKGTCLRDPQPLSPQQ PGATPPSGEPGFPGSHQDPAGLQQSAARGASPNNHRPHVQCEPPAAGPDVSTSRRRCDWE GGLSHRREGRAFSEGDKETWSPESHHSKRNPGWDKRGLEEEDSGSKKRRLLYLLLCFKEN QHWNQLIQDAQKRGAIIKTCDRNYRHDAAKILKLKPVLQRSLTHPPAAAPEASRPQGGLP GNKLDSEFAKTSFTSSLYHTPSDSRESTGTVTTKDPERPLIQDWLRDPRLLRRMGLDPEA KGTCLRDPQPLSPQQPGATPPSGEPGFPGSHQDPAGLQQSAARGASPNNHRPHVQCEPPA AGPDVSTSRRRCDWEGGLSHRREGRAFSEGDKETWSPESHHSKRNPGWDKRGLEEEDSGS KKRRLL NT seq 8841 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgttcctggtgtacgccaggtggcgtttccaccgttgacttccttaagcgc tatgcatccaagagtcactccagtgaatttcagacagctgatgaagacctctgctactgc ttagagtgtgtggccgaataccacaaagcaagggatgatctgccgttcttgcatgaggtt ttatgggaattagaaaccttacgtctcataaatcactttgaaaaatccatgaaggcagaa attggagatgatgatgaattatatatagtagacaacaatggagaggcacagctgtttgac tttactggccaagactttgaaaataagctgcgagttcctcttcttgaaatactgaaatat ccttacctgcttttacatgagcgtgttaatgaattatgtgttgaagcactttgtcggatg gaacaagctaattgctcctttcaggtttttgacaaacatccaggcatctatttgtttttg gtccatcccaatgaaatggtccggcgttgggctatcctgaccgcaagaagtttgggaaaa gtggacagagatgattattatgacttgcaggaggttttgacctgcctttttaaagtcatt gagttggggcttttggaaagtccagacatttatacttcttctgtcctcgagaagggtaaa ctgattcttctgccctcacacatgtatgataccgccaactacaaaaactattggttaggt atttgcatgttgctgaccattctggaggagcaggccatggactcactgttgctgggctca gacaaacagaatgattttatgcaatcaatacttcacaccatggagaggcaagcagatgat gataatgtggatcctttctggccagcgttacactgtttcatggtgattctggatcgcctt ggatctaaggtctggggccaacgtatcgatcctattgaggcatttcaaaccattatcaac aatgggagctacaataaggagatccagaatatacggaacagctccgtaaggaccaagtta gaaccagagtcctatttggatgatatggtgacttgcagccagattgtatacaattataat cccgaaaagaccaaaaaggattcagggtggagatcagccatttgcccagattattgtcct aatatgtatgaagagatggaaacattagccagtgtgcttcagtcagatattggtcaagac atgcgtgttcataacagcacatttctgtggttcatcccttttgttcagtccctcatggat ctgaaggatttgggcgtggcttacatcgtagaggttattcatcacctgcactccgaagtc aaagatgtcctaaaccaaacggatgccatgtgtgacaaagttaccgaattttttcttctg attttggtgtccgtgattgagctgcatagaaataaaaaatgtctgcatttgctgtgggtt agttcccagcaatgggtagaagccattgtaaaatgtgccaagcttcctaccactgcattt gcacggagttctgagaagtcatctggaaattgctccaaaggaacagcaatgatatcctct ctgtcattgcattcaatgccatcgaattctgtacagctggcttgtgtgcagctgattaga agtctccttaaagaaggttatcagcttgggcagcagactctgtgtaagcgattctgggat aagctcaacttatttctgcgtggaaatttatctctaggttggcagttgactactcaggaa acccatgagttacaaacttgtttaaagcaaattattagaaacataaaagtcaaagtacct caatgtagcacttttgtggatttgagtcctgcatgtaaaagctctcctgcatcttacagt aaagaagaaagtgaacaaatagagaggaagtctaataaagacctgcactgtctggaaaac tccagcccaacattttctaaagaaccaatgaaagccgagacatatcaaatgcaggagaat atattgatcaaagcaagtaacactatagaagaggataatgagcaaaattatataaaagat tggaaactcgaagatcatttctcagccaagtcatgcatgaagaagagtagtaaaaacctt ttcactgaaagagctcaagaccaaggtaaagtaagtacaggaaagcagaagtctgtgaaa gggcattgtacttcaagaactgcactgcagaattgtacttccaggaatggtccagaaagg ggatgtgacagaggaatcataatgtcaacacgtttgtcgaccgattctagcactgatgct ctggagaaggcatccacatcaaacgaggatttctctctcaaggatgatgcacttggcaaa acgtcaaaatcaaaaactaaggcacgtaaagatgaaatctgtgctaagttatcacatgta ataaagaagcaacacaggaaaagtactttgatcaataatactggtaatttagatgaaaac ctgactgtgtctaacattgacagcttctattcaagggaagattcaggaggtcagaaagag gatggctccatgcacagtctctccttagaccctagtggcattctggatgataaaaatggg gaacaaaaatctcaaaacagtttattgctgaaaaagaaacaactgaagagtgaagagtta gatattttctcttcccatgaaaacagctatcaaatacaggaatgtcacattgatgataaa gatttggtctcgtttacagaagtgaccaatacttttgtgaagaaaacttctcccttcaaa gatcctgtgactcttcttgaatcaagagataaggaaatcagcaagaatactaatcagatg tcttctcacttgagagaacaggctcctggcctcagtcctcagtctgacaccttaacagat tctcagatagacagagatctccacaaattatctttaatagctcaagccagcgttattaag ttcccatcagattcaactcaaaaaagctcaacccacctacaaagaagagtgaaagacgac agaagatgtttcctggctgaccagaataatactggggaagcctcctggggccagattatt attatttcagattctgatgaggaggatgatgatgatgaaggaattctgggttttgagaag catattaaacaagataaaataggcatcaggaaagaatgtccagagcagcatacttcaata gctaatacgaatgtggaaaagaagctaataaaggaagaggagacaaagtcccttttgcag tttgaagaatcggattctcagttttttgagtttgaaagtccatgtgaagtgttttcagtt tggcaagatcaggaaccagagaagaattcagttcaagagaacagaaaaaattcttgttca gctgacgatatcacgaatgactggggttatgagacagattatgtatctgaagaggttatt aagaaggtagcagagggcattgaaaaacacacagaaccacagagtactatttctgttggg gaattttgtgaaattgaagtaaaaaaacgtaagagaaaacgacttgaaaaaccggtggcc aaagatcctccaaagccttcaccttctgatagaaatgaggaccggtctgatattcttaat gagagaggtctgaatgaaaatgattttaaaagtatggacctgaggacagcaagtcccagt tcaagtgttcagagagacaaagacactacggtttcactaaagaagtctcctccaaagctt cgtacttactccaaacccattaggagagtcccactttctaaaactcctaagaaaacacat tcagataccaagaaagggcagaataaaggttcaaattacataagttgtaggacaactcct gctgtagttccaccaaagaaatttcgccagtgccctgaaccaacttcaacggttgagaaa cttggcctgaagaaggctcctcggagggcatttgagttgtctcagcgatctcttgagtat ttagttcagttacgcgaccatggcaaaactgttggagtggttgatactagaaaaaagact aagttaatttctcctcagactctgtctgtcaaaaacaataagaaactgctgacaagtcaa gatcttcagatgcgaaggcagacgagacccaaatcacaacaaaatagacaaggacttttg gattacgaaagtaaagatgctacaagagcagggccgtgtccagcacagaattctgacata cttgtcccagaatcagatggttcagatgatagttacaaaggaggaactgaggtgattgct aacaacactggcaaaccgttaataaaatctgtgtctttggaatcagaacccgtgaaaaca aaatacgtctctcaggtgactgatgatacttgtcttttgaaccagtgtgctgctgttgtg ttaaatggaagaataccaacaaatgaaatcattgtctctgcttcagcggaccccttaggt ggaggtgacccaacagtacatcatttagagttggcgacgttgaaagacggagagcctgaa tccaacagcgattcagaagatgagaatatatttctaacacagctcgatcctgaagatatg gatttatgttcacagatggagagtggtaatgagaaactcatcgaagtagttcatggcaag gatacagctcaggtagaagattctgtcagtcggccgcagtcggaatcttggagtagcaca aaatgtaagtacaaagattgtattgaaaccccgaaaaaccagggcgagtactgctcaaaa cactgtgaagctacagcagcggatgaggatgtcttccgtaaacctggcttgcctcttgct gcgtccaagccttcaagaccttccactgctaagatctttagctcaagtagtacttcacga attgctaatctttccaagtctttggaaagtacctctgcgcttccaccagctctaaaaaat aagtcaaatggggcacaggctgttttgaaagtcccacagccagcctccctgttgtctcca aagtcagtgggtgaagtgaagagtttgtgcaatgttcttcgtcctcagactccaaataat tccaacaggcaaggttacaaactgacgtttggtgagagcaaatccttctcagcttcctct ccagtcaacattctcttgtcctcgcagtccatctctgacacctttgtcaaagaggtctta aaatggaaatatgaaatgtttttgaactttgatcagtgcgggcccccagcaagcctttgt cagtccatatcaagacctgtgcctgtcagatttcaagattgtggagattattttaatgtt tttttccctttgatggtattgaatacttttgaaacagtggcacaggagtggatcagctct ccaaacaaagagaaattctatcagttgcatttacgaaaatttcctggtgattataaaaaa tactgggagtttgtggttcatcttgaggaatgtgaactagccaaacagtttcatccaaag gaaaatgatttggtgtttttggttcctgaaagacaaaatggagagaagaaagataccgag agaaatcacatgcaagacctccgtgaataccattgcggttatattcataagtttcgccgc acttcagtcatgcgcaatgggaaatctgagtgttccctttccatccagactcaagataat ttgccagtcaatttaaatgaactcgtgaaatgcatcgtaatcagttctctggtaactaca cagaggaagttgaaagccatgtctttgttaagtggacggaaccaactggccagagctgtt ctgaatccaaaccccatggacttctgtacaaaagatttactaactacaacgtctgagaga attatcgcctacttaagagatttcaatgaagaccaaaagaaagcgatagaaactgcatat gccatggtcaaacactccccgtcagttgccaagatctgtctgattcatggaccacctgga acaggaaaatcaaaaactattgttgggcttctgtaccgcctgctgacagagaaccagagg aaggggcattcagatgaaaactccaatgccaaaatcaaacaaaaccgtgtccttgtgtgc gcaccttccaacgcggctgttgatgaacttatgaaaaaaatcatcctcgaatttaaagaa aaatgtaaagacaagaagaatcctttgggaaactgtggagatataaatttagtacggctg ggtccagaaaagtctattaataatgaggtcctaaaattcagtttggacagccaagttaac cacagaatgaaaaaagacctaccttctcatgttcaggagatgcacagaagaaaggaattt ctagatcatcaactcgatgaactttcccgccagcgtgctttatgccgaggtggaagggag atacagaggcaagaattagatgaaaaaattgcaaaggtttcaaaagagaggcaggaacta gcttctaaaattaaagaggttcaaggacgcccacaaaaaacacagagcatcatcatctta gagtcccatgtcatctgctgcacgttgagcacgagtggtggtttactgcttgagtctgct tttcgtggacaagggggcgtccccttcagttgtgtcattgttgatgaggccgggcagtct tgtgaggttgagactcttactccactcatccatcgttgtaacaagctcatcctcgtcgga gatcctaaacagctccctcccacggtcatttctatgaaagcacaggagtatggctatgac cagtccatgatggcgcgtttctacaagctgttggaagacaacgtggagcacaatatgatc ggcaggctgcccattttacagcttactgttcagtacaggatgcacccggacatatgtctc ttcccctctaattatgtttataacagaagcttgaaaacaaatagacagactgaaaccaat cggtgttcatcagactggccatttcaaccttacctggtgtttgatgtcggagacggttca gaaagacgggataatgactcatatgtaaatgttcaagaaataaaactggtaatggaaata attaaacttattaaagacaaaagaagggatgttactttccggaacattggcataataacc cattacaaggctcagaagatgatgattcagaaggatttggacaaagaatttgatagaaaa gggccagcagaagtagataccgtggatgggttccagggccggcagaaggattgcgtcatt gttacgtgcgtcagagcaaataccatgcagggctcaattggatttctggcaagtttgcag agactgaacgtcaccatcacacgagccaaatacagcctcttcatcctcggacatttaagg accctcatggaaaatcagcactggaaccaactgattcaggacgcgcagaagcggggtgcc atcatcaagacgtgcgacagaaactacaggcacgacgcagccaagattctgaagctcaag cccgtgctgcagagaagtctgactcaccctcccgccgcggccccggaggcgtccagaccc cagggcggcttgcccggcaacaagctcgacagcgaatttgccaagacatctttcacttct tccctgtatcacacaccctctgactccagggaatctactgggactgtcacgacgaaggat ccggaaaggcctctcattcaggactggcttcgggacccacgactgctcaggaggatgggc ctggaccccgaagccaaagggacgtgcctgagggatccgcagcccttgagcccccagcag cccggagcgacgcctccctcgggagagccgggcttccctgggagccaccaggatccagct ggcttgcagcagtccgctgccagaggggcctctccgaacaaccacagacctcacgtgcag tgcgagcctccggctgctgggcctgatgtctccacaagtaggagaaggtgcgactgggaa ggagggctcagccacagaagagagggccgggctttcagtgagggggacaaggagacgtgg agccccgagagccaccactcgaagaggaaccctggctgggacaagagggggctggaggag gaggacagcggttccaagaaaagaaggcttttatatctccttctctgtttcaaggaaaat cagcactggaaccaactgattcaggacgcgcagaagcggggtgccatcatcaagacgtgc gacagaaactacaggcacgacgcagccaagattctgaagctcaagcccgtgctgcagaga agtctgactcaccctcccgccgcggccccggaggcgtccagaccccagggcggcttgccc ggcaacaagctcgacagcgaatttgccaagacatctttcacttcttccctgtatcacaca ccctctgactccagggaatctactgggactgtcacgacgaaggatccggaaaggcctctc attcaggactggcttcgggacccacgactgctcaggaggatgggcctggaccccgaagcc aaagggacgtgcctgagggatccgcagcccttgagcccccagcagcccggagcgacgcct ccctcgggagagccgggcttccctgggagccaccaggatccagctggcttgcagcagtcc gctgccagaggggcctctccgaacaaccacagacctcacgtgcagtgcgagcctccggct gctgggcctgatgtctccacaagtaggagaaggtgcgactgggaaggagggctcagccac agaagagagggccgggctttcagtgagggggacaaggagacgtggagccccgagagccac cactcgaagaggaaccctggctgggacaagagggggctggaggaggaggacagcggttcc aagaaaagaaggcttttatag

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