Ailuropoda melanoleuca (giant panda): 100469832
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Entry
100469832 CDS
T01329
Symbol
PARN
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100469832 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100469832 (PARN)
Enzymes [BR:
aml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100469832 (PARN)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100469832 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
T6PP_C
Motif
Other DBs
NCBI-GeneID:
100469832
NCBI-ProteinID:
XP_002918111
Ensembl:
ENSAMEG00000011208
UniProt:
G1LXQ5
LinkDB
All DBs
Position
10:26915947..27068417
Genome browser
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKH
SMDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLIIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYADYVGKKHEEKQSKRKWTEDTWQEVERKRLN
TQCISYALQNHYYHTNSLTATSTAGKRNLSPSPEEADLEARISREISDTELEQTESCAEP
LSEGRKKSKKLKRMKKDLSPAGVIPDSPAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcattgacaaatggttttgacactccagaagaaaggtataagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcgcttttaagtatgaccacacagat
tcaaagtacataacaaagtcatttaacttctatgtgttcccaaaacccttcaatagatcc
tcaccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaatcccgtatttaaatcaggaggaagagaga
cagttaagagagcagtatgatgaaaaacgtctgcagtccaatggtgcaggaactctgtct
tacgtatctccaaacacttcgaaatgtcctgtgacaattcctgaggaccagaagaaattt
attgaccaagtggtagagaaaatagaagacttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgacactttagaaactgaaaagaaagagcgctacattgtc
atcagcaaagtagatgaagaagagcgtaagaggagggagcagcagaaactcgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgccaattcg
ggaaaactcattattggacacaatatgctcttggatgtcatgcacacagttcatcagttc
tactgccctctgcctgcggaccttaatgagtttaaggagatgacaacgtgtgtttttccc
agactcttggatacaaaattgatggccagcacacagccttttaaggatatcatcaacaac
acatcccttgcagaattggaaaagcggttgaaagagacgcctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttacgacacagctactgaacagctccacgaggcgggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttc
cttagccctccaaaaattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagccgaaacgcgatcatgttctccatgtgaccttccccaaagaatggaaaaccagcgac
ctttaccagctttttagtgcctttggtaatattcagatatcctggattgatgacacatca
gcgtttgtttctctcagccagcccgaacaagtacagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgccgactatgtggggaaaaaacacgaggagaag
cagagcaagagaaagtggacagaagacacttggcaggaggtcgagagaaagcggttgaac
actcagtgcatatcctatgctctgcagaaccactactaccacaccaatagtcttacagcg
accagcacggcaggaaagagaaatctgagtcccagcccagaagaagctgacttggaggcc
agaatatcgagggagatttctgacaccgagctcgagcagacagagtcctgtgcagagccc
ctctccgagggaagaaaaaagtccaagaaattaaaaagaatgaagaaggacctctcacca
gcaggagttattcccgacagccctgccaagctcttcgaagtccctgacacgtggtaa
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