Ailuropoda melanoleuca (giant panda): 100470047
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Entry
100470047 CDS
T01329
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100470047 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aml03021
]
100470047 (POLR1A)
Enzymes [BR:
aml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100470047 (POLR1A)
Transcription machinery [BR:
aml03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
100470047 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
100470047
NCBI-ProteinID:
XP_002928679
Ensembl:
ENSAMEG00000005807
UniProt:
G1LGX3
LinkDB
All DBs
Position
4:complement(105636611..105703757)
Genome browser
AA seq
1718 aa
AA seq
DB search
MLSSKNIPWRRLQGISFGMYSADELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILNRFLEENADPTAFEIQEELEQYTAKIVQNNLLGSHGAH
VKNVCESKSKLIAYFWKTHMTAKRCPHCKTGRSVVRKEHNSKLTVTYPAMVHKKANQKDT
EPLGIEEAQMGKRGYLTPTSAREHLTALWKNEGFFLNYLFSGLENVDMESRFNPSMFFLD
FLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDMVLIRKLLALMAQEQELPCEVAAPAK
DEDKDSSVVLDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQI
LEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL
RQAVINGPNVHPGASMVINEDGSRTALSAVNLTQREAVAKQLLTPATGAPKPQGTKIVCR
HVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYRG
LTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDHIPLSLSGKAKINGKAWVQES
PRPVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTC
LARLFTAYLQLYRGFTLGVEDILVKPKADVKRHRVIEESTHCGPRAVRAALNLPEAASCD
EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIK
PPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWQSKHS
NALLRRGAFLNYSQKIQAAVKALNLEGGNQNGRTLGTHQILKLWGELDEQSRRKYQKKAA
PCPDPSLAVWRPDIYFASVSETFERKMDDYSLEWASQAERSYEKSELSLDRLRTLLQLKW
QRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIK
TPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLEKIDVQESFCIGDKQDKFQVYQLRFQ
FLPHAYYQQEKCLRPQDILHFVETRFFKILMESLKKKNSKASAFRSVNTRRATQRDLDNS
GESERNRGEQEGDEEEEGPIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEEEEENND
EDVQEEGHVSANGARKAQERDEEVGSGPEEDSPPAAPLTQPGKSTRSREPQGAEAVERRV
QAVRELHPFIEDYQYDSEESLWCQVTVKLPLMKTNFDMSSLVMSLAQSAVVYATKGITRC
LLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIE
KEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLK
QATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctcaaagaacattccctggcgaaggctgcagggcatttccttcgggatgtat
tcggccgacgaactcaagaaattaagtgtgaagtccattacaaaccctcgttatctggac
agcctggggaacccgtcagtgaatggcctgtatgatttagctttgggccctgcggattcc
aaagaggtgtgctccacctgcgtgcaggacttcaacaactgctctggccacctgggccac
attgagcttccactcacggtgtataatcctcttctctttgataaactctacctgctgctc
cggggctcctgtttaaactgtcacatgctgacctgcccccgggctgtgattcacctctta
gtctgccagcttcgagttctggaagtgggtgccctacaagcagtctacgagcttgagaga
attctgaacaggtttctagaagaaaacgctgatcctactgcctttgaaattcaggaggag
ttagaacagtatacggccaaaattgtacagaacaatctgttgggatcccacggtgcacat
gtgaaaaatgtttgtgagagcaagagcaaactcattgcttacttctggaagacacatatg
actgctaagcggtgtccccactgcaagaccgggcgatcagttgtccgaaaggagcacaac
agcaagctgacagtcacatacccagctatggtgcacaagaaggccaaccagaaggacaca
gagcccctgggaattgaggaagctcagatgggaaaacgagggtacctaacacccaccagc
gcccgagaacatcttaccgccctttggaagaatgaaggattctttctgaattaccttttt
tcgggactggaaaatgtcgacatggagtctagattcaatcccagtatgttctttttggat
ttcctggtggtgccaccctcaaggtatcgccctgtcaatcggctgggggaccagatgttt
accaacggccagacggtgaacttgcaggctgtcatgaaggacatggttctgatccgaaaa
cttctggcattgatggctcaggaacaggagctgccatgtgaggttgcggcacctgccaag
gatgaggataaagactcttcagttgttctggaccgatcctttttgagtatgcttccaggc
cagtccctcacagacaaactttacaacatttggattcgtcttcagagccacgtcaatatt
gtgtttgatagtgagatggacaaattgatgatggaaaagtatcctggcattagacagatc
ctggagaagaaggatggcttattccgaaagcacatgatggggaagcgagtagactacgca
gcccgctcagtcatctgcccagacatgtacattaacaccaacgaaattggaattcccatg
gtgtttgccacaaaactgacctaccctcaaccagtcaccccctggaatgttcaggaactg
aggcaagcagtcatcaatggccccaatgtgcacccaggagcctccatggtcatcaacgag
gatggcagccgtacagccctgagtgccgtcaacctgacccagcgggaagccgtggccaag
cagctcctgacaccggccacgggagcacctaagccccaggggacaaaaattgtgtgccgg
catgtgaagaatggggacatcctcctgctgaaccgacagcccaccctgcacagaccctcc
atccaggcccaccacgcccgcattctgcccgaggagaaagtcctgcggctccactatgcc
aactgcaaggcctataacgctgacttcgatggagacgagatgaatgcccacttcccccag
agcgaactgggccgggctgaggcctatgtcctggcctgcacggatcagcagtaccttgtt
cccaaggatggccaaccattggcgggattgatccaagatcatatggtttcgggtgcaaac
atgaccattcgaggttgctttttcactcgggagcaatatatggagctgctgtaccgagga
ctcacagacaaagtggggcgtgtgaagctctttcctcctgccatcctgaagccctttcca
ctgtggacaggaaagcaggttgtgtcaacgctgctcataaacataatcccagaggaccac
atcccactgagcttatcgggaaaggcgaagatcaacggcaaagcctgggtgcaggagtct
cctcggcctgttcctggctttaaccctgactctatgtgcgagtcccaggtgatcatcaga
gaaggggagctgctctgtggggtgctggacaaggcgcactacgggagctccgcctacggc
ctggtccactgctgctatgagatctacggtggggagaccagcggcaaggttctaacctgc
ctggcccgcctcttcactgcctacctgcagctctacagaggcttcaccttgggcgtggaa
gacatcctggttaagccgaaggcggatgtgaagagacacagggtcatcgaagagtccacc
cactgcgggccgcgggctgtcagggctgcgttaaacctgccagaagccgcgtcatgtgat
gaggtccgagggaaatggcaggatgcccatctgggcaaagaccagagggattttaacatg
attgatctgaagttcaaggaggaagtgaaccattacagcaatgaaattaacaaggcatgc
atgccatttggcctgcacagacagttcccagagaacaacttgcagatgatggtgcagtct
ggagccaaaggttcaactgtgaacaccatgcagatctcctgcctgctgggccaaatcgaa
ttagaaggtcggcgaccccccttgatggcatctggcaagtcactgccctgctttgagcct
tatgagttcacccccagggccggcggtttcgtcactggcagattcctcactggcatcaag
cctcctgagttcttcttccactgcatggccgggcgagagggtctagtggacactgctgtg
aaaaccagtcgctccggctatctccagaggtgcatcatcaagcacttggaggggctggtt
gtccagtatgatctgaccgtccgcgacagtgatggcagcgtggtacagttcctgtacggg
gaggacggcctggacatccccaagacgcagttcctgcagcccaagcagttccccttcctt
gccagcaactacgaggtgataatgaaatcgaagcatctccatgaagttttatccagagca
gatccccaaaaagctctccgtcacttccgagccatcaaaaaatggcagagcaagcattct
aacgccctgctgagaagaggcgccttcttgaattattcacagaaaattcaggcagctgtg
aaagccttgaaccttgagggtgggaaccagaatggccgcacccttgggactcaccagatc
ttgaagctgtggggtgagttagatgagcagagtcgaaggaaataccagaagaaggcagct
ccttgtcctgaccccagtctggctgtttggcgcccagatatctattttgcgtcggtgtca
gaaacatttgaaagaaagatggatgactacagtctcgagtgggcgtctcaagcagagagg
agttacgagaaatcagagctttctcttgacaggttgaggaccctgctgcagctgaagtgg
cagcgctcgctgtgtgacccgggtgaggccgtgggcctgctggctgcccagagcattggg
gagccctccacacagatgaccctgaacaccttccactttgctggcagaggcgagatgaac
gtcaccctgggcattccgaggctgagggagattctcatggtggcgagtgccaacatcaag
acgcccatgatgagcgtgcccgtgttcaacaccaagaaagcactgaagagagtgaaaagc
ctgaagaagcaactcaccagagtgtgcttaggggaggtgttggagaaaattgatgtccag
gagtccttctgtatcggagacaaacaggacaagtttcaggtgtaccagttgaggtttcag
ttcctgccacatgcgtattaccagcaggagaagtgcctgagaccccaggacatcttgcac
ttcgtggaaacaaggttctttaaaattctgatggaatccctcaaaaagaagaacagtaaa
gcctcagctttcagaagcgttaacactcggagagctacccagcgggatctagacaactct
ggggagtcggagaggaatcgcggagaacaggaaggcgatgaggaagaggaggggcccatt
gtggacgctgaagctgaggagggagacgctgatgcctctgatgccaaacgcaaggagaag
caagaagaggaggtggattacgagagcgaggaggaggaggaggaggaggagaacaacgat
gaggacgtgcaggaggaagggcacgtctcggcgaacggtgctcgcaaggcgcaggagcgg
gatgaagaggtgggctcaggccccgaggaggactcgcccccggctgcccccctcacccag
cccgggaagtccacccgcagcagggagccccagggggccgaggctgtggagcgccgggtg
caggccgtgcgcgagttgcacccgttcatagaggactaccagtacgactccgaggagagc
ctgtggtgccaggtgacagtgaagctccctctgatgaagactaactttgacatgagctcc
ttggtaatgtccctggcccagagtgccgtcgtctacgcgaccaagggcatcacaaggtgc
ctcctgaatgaaaccaccaacaagaagaacgagaaggagcttgtcttaaacacggaagga
atcaatctgccggagctgttcaaatacgctgaggttctggacttgcgccgcctctactcc
aacgacatccatgccatggccagcacctacggcatcgaggctgcgctgcgggtgattgag
aaggagatcagggacgtgtttgctgtgtacggcattgcggtcgatccccgccatctctca
ctggtcgccgactatatgtgcttcgaaggcgtttacaagccattgaatcgctttgggatc
cgatcaaactcctcccctctgcagcagatgacatttgaaaccagcttccagtttctgaag
caggccaccatgatgggatcgcacgatgagctgaggtccccttccgcttgcctcgtggtc
gggaaagtcgtcaggggcgggacaggcctgttcgagctcaagcagcccctgagatag
DBGET
integrated database retrieval system
