Ailuropoda melanoleuca (giant panda): 100470346
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Entry
100470346 CDS
T01329
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04140
Autophagy - animal
aml04148
Efferocytosis
aml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100470346 (VPS16)
04148 Efferocytosis
100470346 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100470346 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aml04131
]
100470346 (VPS16)
Membrane trafficking [BR:
aml04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100470346 (VPS16)
Hops complex
100470346 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
100470346
NCBI-ProteinID:
XP_034496274
Ensembl:
ENSAMEG00000011129
LinkDB
All DBs
Position
13:73962988..73983915
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AA seq
849 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA
SVRPVLEIYSASGLPLASLLWKSGPVVSLGWSAEEELLCVQEDGVVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TALCQDRAAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLTQAVQQCIEAAGHEHRPDMQKSLLRAASFGKCFLDRFPPDSFVR
MCQDLRVLNAIRDYHIGIPLTYSQYPQASRKDVYSQWWRGKEKGLRLVLRRLYPLAIQIC
EYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCG
RTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDF
FMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQELGSFHVRASYAAEERIEGRVAA
LQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGRFVDLSLHDTVTTLVLGGHSK
RAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKY
EAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEAELTLVLSHCTGATDAATADKIQ
RARAQAQKK
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggcgaactggaacccgctcggggactctgccttttaccggaaatat
gagctgtacagcatggactgggacctgaaggaggagctcagggactgcctggtagccgct
gctccctatgggggccccattgcactgttgaggaacccgtggcggaaggagaaggcggcc
agtgtacggccagtgcttgagatctattctgcctccggcctgcctctggccagtctgctg
tggaagagcgggcccgtggtgtccctaggctggtcagctgaggaggagctgctctgcgtg
caggaggacggtgtagtgctggtttacgggcttcatggcgacttccggagacacttcagc
atgggcaatgaggtgctgcagaaccgggttctagacgcccggatcttccacactgagttt
ggttcgggggtggccatccttactggggcccaccgctttaccctcagtgccaatgtgggt
gatctcaaacttcgccggatgccagaggtgccaggtctgcagagtgccccctcgtgctgg
accgcactgtgccaggaccgagctgcacacattcttctggctgtggggcctgatctttat
ctcctcgaccatgcagcctgctcggcagtgacgccccctggcctggcccctggagtgagc
agcttcctgcagatggcagtctccttcacctaccggcacctggcactcttcacagacacg
ggctacatctggatggggacggcgtcgctcaaggagaagctgtgtgagttcaactgcaac
atccgggcccccccaaagcagatggtctggtgcagccgtcctcgcagcaaagagagggct
gtcgtggtggcctgggagaggcggctgatggtggtgggtgacgcccctgagagcatccag
tttgtgttggacgaagactcctacctggtacctgagctggatggggtccgcatcttctct
cgtagcacccacgagttcctgcatgaggttccagtggccagcgaggagatcttcaaaatt
gcctcgatggcccctggagcactcttgttggaggcccagaaagagtacgagaaagagagc
cagaaggcagatgagtacctccgggagatccaggagctagggcagctgacccaggccgtg
cagcagtgcatcgaggctgcgggacacgagcaccggccagacatgcagaagagtctgctc
agggcagcctcctttggaaagtgtttcctcgacagatttccacctgacagcttcgtacgc
atgtgtcaggacctgcgtgtgctcaatgccattcgggactaccacatcgggatccccctc
acttacagccagtatcctcaagcgagccgcaaggatgtttacagccagtggtggcggggg
aaggagaaggggctgaggctggtgttgcggaggctttaccctctggcgatccagatctgt
gagtacctgcgccttcctgaagtgcagggcgtcagcaggatcctggcccactgggcctgc
tacaaggtgcaacagaaggatgtgtccgacgaggatgttgctcgggccattaaccagaag
ctgggggacacgccaggtgtctcttactctgacattgctgcgcgggcctatggctgtggc
cgcacagagctggccatcaagctgctggagtatgagccgcgctctggggagcaggtaccc
cttctcctaaagatgaagagaagcaaactggcactgagcaaggccatcgagagtggggac
actgatctggtgttcacggtgttactgcacctgaagaacgagctaaaccgaggagatttt
ttcatgactcttcggaaccagcccatggccctgagtttgtaccgacagttctgtaaacat
caagagctagagacactgaaggacctttacaaccaggatgacaaccaccaggagctgggc
agcttccacgtccgagccagctatgctgcagaggagcgtatcgaggggcgagtcgcagct
ctgcagacggcagctgatgccttctacaaggccaagaatgagttcgcagccaaggccacg
gaggatcaaatgcggctcctgcggctacagcggcgcctggaagacgagctggggggccgc
ttcgtggacctgtctctgcacgacacggttaccaccctcgtcctcggtggccacagcaag
cgtgcagagcagctggcacgtgacttccgcattccggacaagaggctctggtggctgaag
ctgactgccctggcagatctggaagactgggaggagctagagaagttttctaagagcaag
aaatcgcccattggctacctgccctttgtcgagatctgcatgaagcaacacaacaaatat
gaggccaagaagtatgcctcccgcgtgggtcctgagcagaaggttaaggccttgcttctt
gttggggatgtggctcaggccgcagacgtggccattgagcaccggaatgaagcagagctg
accctcgtattgtcccactgcactggagccacagatgcagccacggccgacaagattcag
cgggctagggcacaagcccagaagaagtga
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