Ailuropoda melanoleuca (giant panda): 100470428
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Entry
100470428 CDS
T01329
Symbol
SYNPO
Name
(RefSeq) LOW QUALITY PROTEIN: synaptopodin
KO
K21112
synaptopodin
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100470428 (SYNPO)
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
100470428
NCBI-ProteinID:
XP_034512757
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All DBs
Position
3:complement(105666313..105703635)
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AA seq
1115 aa
AA seq
DB search
MLGPHLPPPPRGLSKDRPTPCNFQIPDGSYRCLALEAEESSGEEGLQGEAGLMNLEEDKV
ASRSGDNLACRATQGAPELPQTLGIQAPSCSRAARGGPQHDSRTSQDWDMVKAQQVMSPS
PRPSAGPTVAQKPALGQSTSIERDLKEAKARSRQIAAQLTTPPSSNSRGVQLFNRRRQRV
NEFTLENHGRRGQKPSQESLRVPPASPTGYASGLSLSPTSLPEPGPPRNTDSQSPDVGVP
AHSMEGCSEKANLLRHLERVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQSPASP
PTAEVHSPAADVNQNLSSLPAALITPASNSNHSPPAAAINQNPPAPVTPQSLPLSNSQQP
SEAQLPPNGTVSDSKPGALCSSGQPPEPAAEVRSSTLLIDKVSAPPSTTNTFSREMTPPS
SSGTPAPDFMSSSLLIDVQPSAPAGSAEQETPGWAATPMPAKLYSEVHFTLAKPPSVVNR
TARPFGIQAAGSTSQMERSPMVERRHLGEKALAPQPPSIAERSPRPQRHVMSHSPMVERR
SVAQRSPALERRPLGNFTPPPTYAETLSTAPLASRVRSPPSYSALYPSSDPKPSHLKGQA
VPASKTGILEESMARRSSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEAGVEE
EPFALGAEASNFQQESAPRDRASPAEEILPEWASCLKSPRIQAKPKPKPNQNLSEASGKG
AELYARRQSRMEKYVIESSGHTELARCPSPTMSLPSSWKYSTNAPGSFRVASRSPARTPP
ASLYHGYLPENGVLRPEPTKQPAYQLRPSLFVLSPIKEPVKPSPRAASPAKPSSLDLVPS
LPKGALPASPALPRPSRSSPGLYTAPGQDGLQPTTVSPTYSSDISPVSPSRAWSPRAKQA
PRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDGWVSPGPWEPGRASSMSSPPP
LPPPPPMSPSWSERSVSPLRPEAEARPPSRQLQALLARNIINAARRKSASPRPAGAESLR
PFSPPGAQPPPPPXIPRSPLPAGPSPCASPRSPLPATPRPFPYRRSPTDSDVSLDSEDSG
AKSPGILGYNICPRGWNGSLRLKRGSLPAEASCTT
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtccccacctcccacctccacctcgtggactcagcaaagacaggcctaccccc
tgcaacttccagatccctgatgggagctacaggtgtctggccttggaggctgaggagagc
agtggcgaggagggcctgcagggagaggccgggctcatgaacttggaggaggacaaggtg
gccagcaggagtggggacaacttggcctgcagagccacccaaggggcaccagagctgccc
cagaccctgggcatccaggcacccagctgctccagggcagcccgagggggtccccagcat
gatagcaggaccagccaggactgggacatggtgaaggctcagcaggtgatgtcccccagc
ccccgccccagcgctgggcccacggttgcccagaaaccagcattgggccagagcaccagc
atcgagagagatctgaaagaggccaaggcccggagccggcagatcgcagcccagctgacc
acccctcccagctccaactcccgcggggtccagctcttcaacaggcgccggcagagggtg
aacgagttcaccttggagaaccacggccggaggggacagaagcccagccaggagtccctc
agggtgccccctgccagccccacgggctatgcctcagggctcagcttgagtcccacctca
ctccctgaaccaggccctccaaggaacaccgacagccagagccctgacgtaggggtccct
gctcacagcatggagggatgttcagagaaggccaacctgctgcggcacctggagagggtg
gccagcgaggaggaagaggtaccactggtggtgtatttgaaggagaacgcagccctgctg
acggccaatgggctgcacctgtcccagaaccgagaagcccagcagagcccagcaagcccg
ccgacggctgaggtccacagccccgctgcagatgtcaaccagaacctttcctccctcccc
gccgccctcatcacaccagcctctaacagcaaccacagcccgccggccgcagccatcaac
cagaacccgccggcacctgtcactccgcagagcctgccgctttcaaacagccagcagccc
tcggaggcccagctccctcccaatggcaccgtgtcagattccaaacccggcgccctgtgt
tccagcgggcagcccccggagccagccgcggaggtgaggtccagcacgctcctcattgac
aaggtgtctgctccacctagcaccaccaacaccttctccagagaaatgactccgccctcc
agctccgggaccccagccccagatttcatgtccagctccctgctcattgatgtacagccc
agcgccccagcagggtcagcagagcaagagacacctgggtgggcagccacacccatgccc
gccaagctctacagcgaggtccacttcacactggccaagcccccgtcagtggtcaacagg
accgccaggcccttcgggatccaggcggcagggagcaccagccagatggagcggagcccc
atggtagagagacgacatctcggggagaaggccctggctccccagccccccagcattgca
gaaaggagccctcggccacagagacacgtgatgtcccatagccccatggtggaaagaagg
tctgtggcacagcgaagccctgccttggagagacggcccttggggaacttcaccccaccc
cccacctatgccgagaccttgtccacggctcccctggcttctcgggttaggtctcctccc
tcctactctgccctttatcccagctccgaccccaagccttctcatctgaagggccaggca
gttcctgccagcaagacgggcattttggaggagtcgatggcccgcaggagcagccggaaa
tccatgttcaccttcgtggagaagcccaaggtgaccccgaatccagacctgctggatctg
gtacagacggccgatgagaagcggaggcagagggaccagggggaggcaggtgtggaggag
gagcccttcgcgctgggggccgaggcctccaactttcagcaggagtcagcaccccgggac
agggccagccctgcggaagagatcctcccggagtgggcctcgtgcctcaagtcaccgcgc
atccaggccaagccgaagcccaaacccaaccagaacctgtctgaggcctcggggaagggg
gctgagctctatgcccgccgccagtcccggatggagaagtacgtcatcgagtcctcgggc
cacaccgaactggcccgctgcccttcacccaccatgtccctgccttcatcctggaaatat
tccaccaatgctcctggcagcttccgagtggcatcccgtagcccagctcggaccccgccc
gcctccctctaccacggctacctgcctgagaatggggtccttcgccctgagcccaccaag
cagcctgcctaccagctgcggccctcgctcttcgtcctctcgcccatcaaggagcctgtc
aagccctcgccgagagccgcctctcccgccaagccaagctccctggacctggtgcccagc
ctccccaaaggggccctcccggcatccccggccctgcctcggccctcccgctcctcaccg
ggcctctacaccgcccccggccaggacggcctccagcccaccaccgtgagcccgacctac
agcagtgatatctcccccgtgtcgccctctagggcatggtctccccgcgccaagcaggcc
cccaggccctccttctccacccggaatgctgggattgaggctcaggatcgccgggagagc
ctgcccacctccccgccctggacgccgggcgcctcccggccccccagcagcctggacggc
tgggtgagcccggggccgtgggagccaggccgggcgagcagcatgagcagccccccgccg
ctcccgccgccgccgcccatgtctccctcgtggagcgagcgctcggtatccccgctgcga
cccgaggccgaggcgcggcctcccagccgccagctgcaggccctcctggcgcgaaacatc
atcaacgcggcccggcgcaagagcgcctccccgcggccggcgggcgccgagagcctgcgg
cccttctctccgcccggggcgcagccgccgccgccgccgnngatcccgcggagcccgctg
cccgccgggccctcgccctgcgccagcccccggagtccgctgcccgcgacgcccaggccc
ttcccctaccgccgctcgcccacggactccgacgtgtccctcgactccgaggactccggg
gctaagtcgcccggcatcctcggctacaacatctgtccccgcgggtggaacggcagcctg
aggctcaagcgtggcagcctccccgcggaggcctcctgcaccacctaa
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