Ailuropoda melanoleuca (giant panda): 100471138
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Entry
100471138 CDS
T01329
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100471138 (COL20A1)
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
100471138
NCBI-ProteinID:
XP_034497453
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All DBs
Position
13:complement(45647399..45673647)
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AA seq
1020 aa
AA seq
DB search
MWPKGLSSHRQCAMSGLLCPHLGLCLWLWLGVALGRGQGQAGSHLRLAVLPEDRLQMKWS
GSEGSSLGYLLQVKPMAGDTEQEVMLTTKTPKATVGGLSPFKGYTVQIFELTRSGNSLLA
QREFVIADLKSHSVSRSSRKPLEAGMQPTPSHGGSPDPGPQVAWSPSQDLPTLASPHFRC
TPPTPVDMIFLVDGSWSIGHSHFQQVKDFLASVIEPFEIGPNKVQVGLTQYSGDPQTEWD
LNAFRTKEVVLAAVYSLRYKGGNTFTGLALTHVREQNLKPGAGPRPEAAKVVILVTDGKS
QDDARAAGRILKDLGVAVFAVGEQPPAVGWGSHSRWGSLQSHFPPRAGGPVVSMPQGGPV
PAPRSWEHPRALGGGTQCGASEQSPEFTVQCVNGPLEVCPTHGAAGARRPRDLIPQQNVV
GYVLAFLRPALSELLGAAFLTARRSPPSDLALAPESPSSLRVSWTPPSGHVLHYRLTYML
ASGSGPEKSISVPGPRSHVTLPDLLAATKYRVLVSAVYGAGESMAVFAIGRTACPTLSPD
GPLSGFDLMAAFGLVEKEYASIRGVAMERSAFGCARTFTLFKDAQLTRRASDLQLAAPPP
EHTVVFLLRVLPETPRETFALWQMTAEDFQPVLGVPLDAGRKSLTYFNHDPRATLQEVTF
DLPEVRRIFFGSFHKVHVAVGLSKVRLYVDCWKVAERPIGEAGSPPAAGFVMLGRLAKAR
GPRSSSATFQLQTLQIVCSDSWAEEDMCCELPVAKDGETRPAFPSACTCSSQTPGPPGPQ
GPPGLPGRNGAPGEQGFPGPRGPPGVKGEKGDHGLPGLQGYPGQQGAPGKVGLQGPKGMR
GLEGSAGLPGPPGPRGFQGMAGARGTSGERGPPGAVGPTKRTSAAGPSARDPPRGHRTSA
PAYVRTEVLTSEIRVPAPMRGLEPPTRHAGMAAQMAPYEAGGATMPGLRPSGLCTLLLGV
RTFQAPVGSGVTGAPGDREGEGVAAALGLTQPSVTADGDPRLGLAAARPLGCLVTVCSLS
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgtggccgaaaggcctctcttcgcacaggcagtgtgccatgagcggcctcttgtgcccc
cacctcgggctctgcctctggctgtggctgggtgttgccctgggacgcggccagggacaa
gcgggcagccacctgaggctggcagtgctgcctgaggaccggctgcagatgaagtggagt
gggtcggaggggagcagcctcgggtacctgctgcaggtgaagcccatggcaggggacacg
gaacaggaggtgatgctgaccaccaagacccccaaggccacagtggggggcttgagcccc
ttcaagggctacaccgtgcagatcttcgagctcaccaggtcagggaacagcctgctggca
cagagggagtttgtgattgcggatttgaagagtcactctgtgagcaggagcagtcggaag
ccactggaggcaggcatgcagcccacgccctcccacggggggagcccagaccctgggccc
caagttgcctggtccccaagccaagacctgcctactcttgccagcccccacttccgctgc
acaccccctacacccgtggacatgatctttctggtggacgggtcctggagtattggccac
agtcatttccagcaggtcaaagatttcctggccagtgtcatcgagccctttgaaattggg
ccaaataaagtccaagtcggcctgactcagtacagtggagacccccagactgagtgggac
ctcaacgccttccgcaccaaggaggtggtgctggcagccgtctacagcctccgctacaaa
gggggaaacacattcacaggcctggccctgactcacgtgcgggagcagaacctgaagccc
ggtgcggggccccgtccagaggcggccaaggtggtgatcctagtgacggacggcaagtcc
caggatgatgcccgtgctgctggccgcatcctcaaggacctgggtgttgccgtctttgct
gtgggtgagcagcccccagctgtcggctggggttctcacagccgttggggcagtttgcaa
tcccacttcccgccccgggctggaggtccggtggtgtctatgccacagggaggacctgtc
cctgctccgaggagctgggagcacccgcgggcgctcggagggggcacacaatgtggggct
tctgagcagagccccgagttcacagtgcagtgtgtgaatggccccctcgaggtgtgtccc
acgcacggtgccgcaggcgccaggcgcccccgtgacctcattccgcagcagaatgtggtg
ggatacgtgctggccttcctccggcccgccctctctgagctcctgggtgctgccttcctc
acagcacgccggagcccaccctccgacctggccctggctcccgagtcacccagcagcctg
cgggtcagctggacgcccccaagtggccatgtcctccactaccggctcacctacatgctg
gcctcgggctcaggacccgagaagtcgatctctgttccaggacccaggagccacgtgact
ctgcctgacctgctggcagccaccaaatacagggtcctggtctcagcagtctacggagca
ggggagagtatggcagtatttgccataggccggacggcctgccccaccctcagccccgat
ggccccctctcaggctttgacctcatggcggccttcggcctggtggagaaggagtacgcc
tccatccgcggtgttgccatggagcgctcggcgttcggctgtgccaggaccttcacgctc
ttcaaggatgctcagctgacccgccgggccagtgacctccagctggccgcccccccgccc
gagcatacggtggtcttcctgctgcgtgtgctgcctgagactccccgcgagaccttcgcg
ctgtggcagatgacggccgaggacttccagcctgtcctgggggtcccgctggacgctggc
aggaagtctctgacctacttcaaccacgaccccagggccaccttgcaagaggtcactttt
gacctgcctgaagtgaggaggatattctttggaagcttccataaggtgcacgtggccgtg
ggcctctccaaggtcaggctctacgtggactgctggaaggtggccgagaggcccattggg
gaggcgggcagcccacctgccgcaggtttcgtgatgctggggaggttggccaaggcccgg
ggcccccggagcagctcagccacattccagctccagacattgcagatcgtgtgcagcgac
tcctgggccgaggaggacatgtgctgcgaactccccgtggcgaaggatggagagacccgc
cctgccttcccttctgcctgcacctgttcctcgcagacccctgggccccccgggccccaa
ggacctccgggcctccctggaaggaacggagccccaggagagcagggcttcccagggccc
aggggtccgccaggggtcaaaggagagaaaggggaccatgggcttccgggcttgcagggc
tatcccggtcagcagggtgcccccgggaaggtcggcctccagggaccaaagggaatgcga
ggcctggaggggagcgctggcctgcctggacctcctggcccgaggggcttccaaggcatg
gcaggagccaggggcaccagcggggagagaggacccccaggggccgtagggcccacaaaa
agaacatcggcggccgggcccagtgccagggaccctccccgcggccaccgcacgtctgca
cccgcttatgtaaggactgaagtgcttacatctgaaatccgtgtcccggcccctatgcgg
ggcctggagccccccacccgccacgcgggcatggctgcccagatggcgccctacgaggca
ggtggggcaacaatgcccggacttagaccctcgggtctctgcaccctgctcctgggcgtg
aggaccttccaggccccagtcgggtccggtgtcaccggtgccccaggggacagggagggc
gagggtgtggctgcggccctggggctcacgcagcccagcgtcactgccgacggggacccg
cggttggggctggcagcagcaaggcccctcggatgcttggtcaccgtctgctccctctcc
tga
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