Ailuropoda melanoleuca (giant panda): 100472021
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Entry
100472021 CDS
T01329
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100472021 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aml03041
]
100472021 (PRPF40B)
Spliceosome [BR:
aml03041
]
Complex A
U1 snRNP components
U1 related factors
100472021 (PRPF40B)
Complex B
100472021 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
RhoGAP-FF1
DUF4936
WW_2
Motif
Other DBs
NCBI-GeneID:
100472021
NCBI-ProteinID:
XP_034502392
Ensembl:
ENSAMEG00000000956
LinkDB
All DBs
Position
16:39751619..39771665
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AA seq
1041 aa
AA seq
DB search
MISCLFVSLQLIYVFLFQERHRICSFSPFPVSLCHTSYFSLAPRCNETHSCPGTAASEIG
AGVFQEEKYTHCTGSSGKGGLWKFHGNLYSFRRSVLCGNCPKQSSIWILARGLRSKLKTV
IARFSGTYAKLKMLIYIGSRFWSPAPSSACPLPTGAPHDATTLHAPSRNPPTLSSDGTTP
HESETTSHPPDATWHHAPNASTNGGTTTTHADTRNGTSHDARNADASGACHRSAAVAGTG
PPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYY
NNQSKESRWTRPKDLDDLEALVKQEAAGKQQQPQTLQPQPPQPQPEPPPVPPGPTPLPLG
LLEPEPGGSEDCDMSEAAQPVEQGFLQQPEEGPSSATGQHQPPQQEEEESKPEPERSGLS
WSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQRE
KEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYD
DVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQL
QNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHS
MSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFC
VEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAA
FRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHT
KGRKHGRKGKKHHRKRSHSPSFPDLRASGGQRTCVLTCVCRSAQGSESEEELPPPSLRPP
KRRRRNPSESGSEPSSSLDSVESAGAALGGRGSPSARLLLGSDHGLRKAKKPKKKTKKRR
HKSNSPESETDPEEKAGKESDEKEPEQDKDRELRRAELPNRSPGFGVKKEKTGWDTSESE
LSEGELERRRRTLLQQLDDHQ
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgatcagttgtctcttcgtctctctccagctcatatatgtgtttttgttccaggaaaga
cacaggatctgctctttcagcccctttcctgtatccctctgtcacacaagttacttcagt
cttgccccaaggtgtaatgagacccacagttgtccaggcactgcagcaagtgagataggg
gcaggggtgtttcaggaagaaaagtatacacattgcacgggaagctcagggaagggaggg
ctgtggaagttccatggtaatttatattcattccgtcgctctgtcctctgcgggaactgt
ccaaaacagtccagcatctggatcctggccaggggtctccgttccaagttaaagacggtc
attgctcgcttcagcggcacatatgccaagttaaagatgctcatatacatcggttcccga
ttctggtccccggcccccagcagcgcctgcccccttcccaccggggccccccatgatgcc
accacccttcatgccccctccaggaatccccccaccctttcctccgatgggactaccccc
catgagtcagagaccaccagccatccccccgatgccacctggcatcatgcccccaatgct
tccaccaatgggggcaccaccaccactcacgcagataccaggaatggtacctcccatgat
gccaggaatgctgatgccagcggtgcctgtcaccgcagcgctgctgtggctgggacaggc
cctccgagggcgctgtggagtgagcatgtggcccctgacggacgcatctactactacaac
gctgacgacaagcagtccgtgtgggagaagcccagcgtgctcaagtccaaggcagagttg
ctgctgtcccagtgtccctggaaagagtacaagtcagacacaggcaaaccttactactat
aacaaccagagtaaggagtctcgctggacccggcccaaggacctggatgacctggaggct
ctagtcaaacaggaggctgcagggaaacagcagcagccccagacactgcagcctcagccg
cctcagccccagcctgagcccccgcctgtgccgcctggccccacccctctgcccctgggc
cttctagagcctgagccaggtgggagtgaagattgcgatatgtcagaggctgcccagcct
gtggagcagggctttctgcagcagccggaggagggccccagcagtgctactggacagcat
cagccaccacagcaggaggaagaggaatcaaagccagaaccagagaggtctggcctcagt
tggagcaaccgggagaaggcaaagcaggccttcaaggagctgctgagggataaggctgtc
ccctccaatgcctcgtgggaacaggccatgaagatggtggtcaccgacccccgttacagt
gccttgcccaaactgagtgagaaaaagcaggcattcaatgcctacaaggcgcagcgggag
aaggaggagaaggaagaggcccggctaagggctaaggaggccaagcagaccttgcagcat
ttcctggagcagcacgaacgcatgacctctaccacccgctaccggcgggcagaacagacc
tttggggagctggaggtgtgggctgtggtccctgagagggatcgaaaagaggtttatgat
gatgtcctcttcttcctggccaagaaggagaaggaacaggccaagcagctccggcgccgc
aacatccaggccctgaagagcatcctggatgggatgagtagtgtcaacttccaaactacg
tggtcccaggcccagcagtacctcatggataaccccagctttgctcaggaccaccagctg
cagaacatggacaaggaagatgcactgatctgcttcgaggagcacatccgagctttggag
agggaggaggaggaggagcgggagcgggcccgccttcgggagcggcgtcagcaacgcaag
aaccgggaggccttccagaccttcctggacgagctgcacgagacagggcagctgcactct
atgtccacctggatggagctgtatccagctgtcagcactgatgtccgctttgccaacatg
ctgggccagccgggctccacccctctggacttgttcaagttctatgtggaggagttgaag
gcacgattccatgatgagaagaagatcattaaggacatccttaaggaccggggcttctgc
gtggaggtgaacacagcctttgaggacttcgcccacgtcataagctttgacaagagggct
gctgcgctggacgcaggcaacatcaagctgaccttcaatagtctgctggagaaagcagag
gcgcgggagagagagcgggagaaggaggaggcgcgaaggatgcggcgcagggaagctgcc
ttccgaagcatgctgaggcaggccgtgcctgccctggagctgggcactgcctgggaagag
gtccgtgagcgctttgtgtgcgactcagcctttgagcagatcaccctggagtcggagcgg
atccggctcttccgggagttcctgcaggtactggagactgaatgccagcacctccacacc
aaaggccgaaaacacggcagaaagggcaagaagcaccatcgaaagcgttcccactcgccc
tcattcccagacttgagggcttctggaggccagagaacctgtgtgctgacatgtgtctgc
cggtctgcccagggctctgagtcggaagaggagctgcccccgccgtctctccgacccccc
aagcggagaaggcggaacccctcggagtcaggctccgagccctcttcctcacttgattcg
gttgaaagtgcgggtgctgcccttggaggacggggctccccatccgctcgccttctcctt
ggatcagatcatggccttcggaaagccaagaaaccaaaaaagaaaactaagaagagaaga
cacaagtcgaacagtcctgagagcgagacagaccctgaggagaaagctggcaaggagagt
gatgagaaagaaccagaacaggacaaggacagggagctccggcgggcagaactccctaac
cgctccccaggttttggagtcaagaaggagaagacgggctgggacacgtcggaaagtgag
ctgagcgagggggagctagaaaggcggcggcggacactcctgcagcagctggatgaccac
cagtga
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integrated database retrieval system
