Ailuropoda melanoleuca (giant panda): 100473318
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Entry
100473318 CDS
T01329
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100473318 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aml03041
]
100473318 (DHX16)
Enzymes [BR:
aml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100473318 (DHX16)
Spliceosome [BR:
aml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100473318 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
100473318 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
Flavi_DEAD
SecA_DEAD
nSTAND3
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
100473318
NCBI-ProteinID:
XP_002928900
Ensembl:
ENSAMEG00000013213
UniProt:
D2I129
LinkDB
All DBs
Position
5:complement(26342079..26358295)
Genome browser
AA seq
1043 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAR
DFALRLWNKVPRKALVEKPARVAEREARALLEKNRSYKLLEDSEESSEETVGRAGSSLQK
KRKKRKHLRKKCQEEEEEEEEISEKGKRKTGGSKQQTEKPESEDEWERSERERLQDLEER
DAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKR
EREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNRY
HMPEETRGQPARAMDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLE
EEETIEFVRATQLQGDEEPSGPPPPTQAQQKESIQAVRRSLPVFPFREELLAAIADHQVL
IIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVG
YSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKD
VARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVS
VLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQAR
IFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKAS
ANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF
DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSE
EILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWC
YENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSG
YRTVKQQQTVFIHPNSSLFDEQPRWLLYHELVLTTKEFMRQVLEIDSSWLLEVAPHYYKA
KELEDPHSKKMPKKIGKTREELG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggctggactggagcgctgggtgcaggacgagctgcattcggtgctgggg
ctgagcgagcggcacgtggcccagttcctgattggtaccgcgcagcgctgcgcctcggcc
gaggagtttgtgcagcgcctgcgagacaccgataccctggacctcagcgggccggcacgg
gacttcgctctgaggctctggaacaaggtaccacggaaggcattagtagaaaagccagct
cgggtggccgagcgagaggcccgagccctgctggagaagaaccgatcctataagttgctg
gaagacagtgaggagagcagcgaggagactgtaggcagagctgggagcagtctccagaag
aagcgtaaaaaacggaaacatctcaggaagaaatgtcaggaggaggaagaagaggaggaa
gagatttctgagaaagggaagagaaagacaggggggagtaaacagcagactgagaagccc
gagtcagaggatgagtgggagcggtcggagcgagagcgccttcaggacctggaagaacgc
gatgccttcgctgagcgggttcggcagcgggacaaggatcgaactcgcaatgtcctggag
cggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggctgaggaagac
cggaaagccatggtccccgagctgcggaagaaatcccgccgagagtacttggctaagcgg
gaacgagagaagcttgaggacctggaggctgagctggctgatgaggagttcctttttggg
gatgtggagctgagccgacatgaacggcgggagctcaaatataagcggcgagttcgggat
ctggcccgagagtaccgggcggctggggagcaggagaagctggaggccaccaatcgttac
cacatgcccgaggagacccgaggccagccggcacgagctatggatctggtggaagaggag
tctggcgcccctggggaggagcagcggcgctgggaggaggcccggctgggggcagcgtcc
ctgaagtttggggcccgagatgctgcctcccaggagcccaagtaccagctggtgctggag
gaagaggagaccatcgagtttgtccgggccactcagctccagggcgatgaggagccatca
ggtccaccgcctccaacccaggcccagcagaaggagtccatccaggctgtccgccgcagc
ctcccggtgttccccttccgcgaggagctcctggctgccattgctgaccatcaggtcctc
atcatcgagggtgagacgggctccgggaagaccacccagatcccgcagtatctctttgag
gagggttatacaaagaaaggaatgaagattgcctgcacccagccccggagagtggcagcc
atgagtgtggctgcccgggtggcccgggagatgggtgtgaagcttgggaatgaggttggc
tacagcatccgctttgaggactgcacgtcagagcgaactgtcctccgctacatgacagac
gggatgcttctccgggagttcctctctgaacctgaccttgcaagttacagtgtggtgatg
gtagatgaggctcatgaacggaccctacacacagacattctctttgggttaatcaaagat
gttgctcgcttccggcctgagctgaaggtcttggtggcttcagccacactggacactgcc
cgtttttccaccttctttgatgacgcccctgtcttccgaatccctggacgcaggtttcca
gttgacatcttctataccaaggctccggaggctgactacctggaagcttgtgtagtgtct
gtgctgcagatccatgtgacccagccccctggggatatcctggtgttcctgacaggacag
gaggagattgaggccgcctgtgagatgctccaggatcgctgccgccgcctgggctccaaa
atccgggagctcttggtgttacccatttatgccaacctgccttccgacatgcaggctcgt
atcttccagcccacgccccctggggcacgaaaggtggttgtggcaacaaacatcgctgag
acatcgctcaccattgaaggcatcatttatgtgctggatccagggttctgtaagcagaag
agctacaaccctcgcacgggcatggaatccctcactgtcacaccctgcagcaaggcctca
gccaatcagcgggcgggtcgggcgggtcgggtagctgccgggaagtgcttccgcctgtat
actgcctgggcctatcagcatgagctggaggagaccaccgtgccggagatccagaggacc
agcttgggcaatgttgtgttgttgctcaagagcttagggatccatgacctaatgcacttc
gatttcctggaccctccaccatatgagaccctactgctggctttggaacaactgtatgcc
ctgggagccctcaaccaccttggggagctcaccacgtctggtcgaaagatggcagagcta
cccgtggaccccatgctgtctaaaatgatcctggcctctgagaaatatagctgttcagaa
gagatcctgacggtggctgccatgctgtctgtcaacaactccatcttctaccgacccaag
gacaaggttgtccatgctgacaatgcccgtgtcaactttttcctccctggtggagaccac
ctggttctgctgaacgtttatacacagtgggctgagagtggttactcttcccagtggtgc
tatgagaacttcgtacagttcagatcaatgcgccgagcccgggacgtgcgggaacagctg
gaggggctcttggaacgtgtggaagttggtctcagctcttgccagggggactatatccgt
gtacgcaaggccatcacagctggttatttctaccacacggcccggttgactcgtagcggc
tatcgcacagtcaaacagcagcagacagtgttcattcaccccaactcctcactctttgat
gaacagccacgctggctgctctaccatgaacttgtcttgaccaccaaggagttcatgaga
caggtattggagattgacagcagttggcttctggaggtggctccccactattataaggcc
aaggagctagaagatccccattctaagaaaatgccaaaaaaaattggcaagactcgagaa
gagctagggtaa
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