Ailuropoda melanoleuca (giant panda): 100473479
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Entry
100473479 CDS
T01329
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X6
KO
K12821
pre-mRNA-processing factor 40
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100473479 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aml03041
]
100473479 (PRPF40A)
Spliceosome [BR:
aml03041
]
Complex A
U1 snRNP components
U1 related factors
100473479 (PRPF40A)
Complex B
100473479 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100473479
NCBI-ProteinID:
XP_002928470
Ensembl:
ENSAMEG00000017179
UniProt:
G1MFN1
D2HZZ3
LinkDB
All DBs
Position
2:complement(123716881..123776355)
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AA seq
994 aa
AA seq
DB search
MQATPTEAEAGGESPQSCVSAAHSDWTVGKPVSLLAPLIPPRSAGQPLTFGPSGRQPLRS
LLVGMCSGSGRRPSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHG
MMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAK
SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQ
TKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECSTTSTAPVPTTE
IPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASNTVSGTGPVVPEPEVTSIVA
TVVDNENTVTISTEEQAQLTSTPAVQEQSMEVSSNTGEETAKQETVADFTPKKEEEESQP
AKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNA
YKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERD
RLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHE
HGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDIL
KDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE
CQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESE
RSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKT
GKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgactgaggctgaggctgggggcgaatcgccgcagagctgcgtgtcg
gcagcgcactctgattggacagtggggaagcctgtcagcttattggccccgctgattccg
ccccgtagcgcagggcagcctttaacctttggcccgagcgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggccgagcagtctgagcccgacgatg
aggccggggacgggagcggaacgtggaggcctcatgatggggcaccctggcatgcattat
gccccaatgggaatgcaccctatgggtcagagagccaatatgcctcctgtacctcacgga
atgatgccgcaaatgatgccccctatgggagggccgccaatgggacaaatgcccggaatg
atgtcttccgtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcct
gccttaccgccaggagtaaataatatggatgtagcagcaggtacaacatctggtgcaaaa
tcaatgtggactgagcataagtcacctgatggaaggacttactactacaatactgaaaca
aaacagtctacttgggagaaaccggatgatctgaaaacacctgctgagcaacttttatct
aaatgtccctggaaggaatacaaatctgactcgggaaagccttactattataattctcaa
acaaaagaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccagaat
accattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaa
gaaagcagtaagcaagaagagtgcagcacaacatcaacagccccagttcctacaacagaa
attccgaccacaatgagcaccatggctgctgcggaagctgccgccgctgtcgttgctgct
gcagccgctgctgctgctgctgccgccgcagccaatgccagtgcttccacctctgcttcg
aatactgtcagtggaactggtccagttgttcctgagcctgaagttacttcgattgttgct
actgttgtagataacgagaatacagtgacaatttcaactgaagaacaagcacaacttact
agtactcctgctgttcaggaacagagtatggaagtatccagtaatactggagaagaaaca
gctaagcaggaaactgtagctgattttactcccaaaaaagaagaggaggaaagccaacca
gcaaagaaaacctatacttggaatacaaaggaagaggcaaagcaagcgtttaaagaatta
ttgaaagaaaagcgggtaccatctaatgcttcatgggaacaagctatgaaaatgatcatt
aatgatccacgatacagtgctttagcaaagttgagtgaaaaaaagcaagcctttaatgct
tacaaagtccagacagagaaagaagaaaaggaagaagcaagatcgaaatacaaagaggca
aaggaatcctttcagcgttttcttgaaaatcatgagaaaatgacttccacaaccagatac
aaaaaagcggagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgtgat
cgtcttgaaatctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagca
aagcagttacgaaagagaaattgggaagccttaaaaaacatacttgacaacatggctaat
gtaacatactctactacctggtctgaagctcagcagtatctgatggataatccaactttt
gcagaagatgaggaattacagaacatggataaagaagatgcattaatttgctttgaagaa
cacatccgagctttagaaaaggaagaagaagaagaaaaacagaagagtttgctgagagaa
aggagacggcagcgtaaaaacagagaatcttttcagatatttttagatgaactgcatgaa
catggacaactgcattctatgtcatcttggatggaattgtatccaacaattagttccgac
attagatttactaatatgcttggtcaaccgggatcaactgcacttgaccttttcaagttt
tatgttgaggatcttaaagcacgttatcatgatgagaagaaaataataaaagacattcta
aaggataaaggatttgtagttgaagtaaataccaccttcgaagactttgtggccataatc
agttcaactaaaaggtcaaccacattagatgccggaaatattaagttggctttcaacagt
ttactagaaaaggcagaagcccgtgaacgcgaacgagaaaaagaggaggctcggaaaatg
aaacgaaaagagtctgcatttaagagtatgttgaaacaagctactcctccaatagaattg
gatgctgtctgggaagatattcgggagagatttgtaaaagagccagcatttgaggacata
actctagagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcatgaa
tgtcaacatcatcattcaaagaacaagaaacattctaaaaaatctaaaaaacatcacagg
aaacgttcccgttctagatcgggttcagattcagatgatgatgacagccattcaaagaaa
aaaagacagcgatcagagtctcggtctgcctcagaacattcttctagtgctgagtctgag
agaagttataagaagtcaaaaaaacataagaagaaaagcaagaagaggagacataaatct
gactctccagagtcagatgctgagcgagagaaggataaaaaagaaaaagaccgagaaagt
gaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaagact
ggaaaggattctgggaattgggatacttctggcagtgaactgagtgaaggggaattggaa
aagcgcagaaggacccttttggagcaactggatgatgatcaataa
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