KEGG   Ailuropoda melanoleuca (giant panda): 100474432
Entry
100474432         CDS       T01329                                 
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
  KO
K20177  vacuolar protein sorting-associated protein 3
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:aml00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    100474432 (TGFBRAP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:aml04131]
    100474432 (TGFBRAP1)
Membrane trafficking [BR:aml04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    100474432 (TGFBRAP1)
SSDB
Motif
Pfam: Vps39_1 zf-Vps39_C CNH Clathrin TPR_Vps41
Other DBs
NCBI-GeneID: 100474432
NCBI-ProteinID: XP_002913545
Ensembl: ENSAMEG00000013278
UniProt: D2GWY4
LinkDB
Position
4:61958819..62000430
AA seq 859 aa
MMSTKAFTLVSAVEWELLAGDKERVHIECVECCGKNLYVGTGDCVVYHFLLEERALPTGT
ATFSATKQLHRHLGFRKPVNELRAASALNRLLVLCDNSITLVNMMSLEPVPSGARIKGAA
ALALNENPVNGDPFCVEVCIISVKRRTIQLFLVYEDRVQIVREVSTPEQPLAVAVDGHFL
CLALTTQYIILNYNTGFSQDLFPYCSEEKRPIVKRIGRQEFLLAGPGGLGMFATVAGISQ
RAPVHWSENVIGAAICFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVA
TSKGVYILVPLPLEKQIQDLLASHRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQ
FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEK
MAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENSCLLTDSA
AWLEKHNKYFALGLLYHYNNQDAAAVQLWVNIVNGDIHDSTRSDLYEYVVDFLTYSLDQE
LVWKYADWVLQKSEEVGVQVFTKRPLDKQQNSFNPDSVITCLKKYSKALVKYLEHLVIDR
RLQKEEYHTQLALLYLDEVLRQRSGADSGAAEATEAQLKLRHLLQESDLYRVHLLIDRIR
GAGLPMESAILHGKLEEHEEALRILVHELRDFPAAEDYCLWRSEGRDPPYRQRLFHTLLA
MYLQPGPAAPELTVAATDLLNHHAADFDAARVLPLLPGSWSVQLLHPFLTGAVRSSVHAR
RTTQVALGLAKSENLIYKYDKMKLKGSSVQLSDKKVCQMCQNPFCEPVFVRYPNGGLVHT
HCATSRHTNPSSPGPGART
NT seq 2580 nt   +upstreamnt  +downstreamnt
atgatgagcaccaaggccttcacgttggtctctgccgtggagtgggagctgctggcaggc
gacaaggagcgggtgcacatagagtgcgtggagtgctgcgggaagaacctctacgtgggc
accggtgactgcgtcgtctaccacttcctgttggaggagcgggcgctgcccaccgggacg
gccaccttctccgccaccaagcagctgcaccgacacctgggcttccggaagccagtgaac
gagctgcgagcggcctcggccctcaacaggctgctggtgctctgtgacaactccatcacc
ctggttaacatgatgagcctggagcccgtgccctcgggggcgcgcatcaaaggggccgcg
gcgctggccttgaacgagaaccctgtgaacggagacccgttctgcgtggaagtctgcatc
atctcggtcaagcgcaggaccatccagctgttcctggtgtacgaggaccgggttcagatc
gtcagggaggtgtccacgccggagcagcccctggccgtggccgtggacggccacttcctg
tgcctggctctgaccacgcagtacatcatcctgaactacaacacgggcttctcccaggac
ctgtttccttactgcagcgaggagaagcgccccatcgtcaagaggatcgggagacaggag
ttcctcctggcaggtcccggaggactgggcatgtttgccacagttgctggcatatctcag
cgagcccctgtgcactggtcagagaatgtgatcggggcggccatttgcttcccgtatgtc
atagcgctcgatgatgaattcatcacggtgcacagcatgttggaccagcagcaaaagcag
accctgccctttaaggaaggacacattctacaggatttcgaaggaagagtgattgtcgcc
acaagtaaaggagtttacatcttggttccgttacccctggaaaagcaaatacaggatctt
ctagcaagccatagagtggaagaggctttggttttagcaaaaggagcccggaggaacatt
ccaaaagaaaaatttcaggtaatgtacaggaggattctgcaacaggccgggtttatacag
tttgcacaacttcagttcctggaagctaaagagctcttcagaagcggccagcttgacgtc
cgggagctgatctctctctaccccttcctgttgcccacctcctcctcattcacacggtcc
caccctcctctccacgagtacgcagacctgaaccagctgacccagggggaccaggagaag
atggccaagtgtaagcgctttctcatgagctacctgaacgaggtccgcagcacagaggtc
gccaatggctacaaagaggacatcgacacggccttgctcaagctgtacgcggaggccgac
cacgacagcctcctggacctcctggtcaccgagaactcctgtcttctaacggacagcgct
gcctggctagagaagcacaacaagtattttgcactcggactgctctatcattataataat
caagatgcggctgccgtccagctctgggtgaacatcgtgaatggggacattcatgactcc
actcgctcggacctatatgaatatgtcgtcgacttccttacctacagcttagaccaggaa
ctcgtgtggaagtatgccgattgggtcctgcagaaaagtgaagaggttggagttcaggtt
ttcaccaagagacctttggacaagcagcagaacagtttcaatccggacagtgtgatcact
tgccttaagaaatactctaaagcccttgtcaagtacctggagcatctcgtcatagacagg
aggctgcagaaggaggagtaccacacgcagctggccctcctctacctggacgaggtgctg
cggcagaggtccggcgccgacagcggggctgcagaagccacggaggcacagctgaagctt
cggcacctgctccaggagtccgatttgtaccgagtccacttgctgatagatagaatccgg
ggtgcggggctccccatggagagcgccatcctgcacgggaagctggaggagcacgaggag
gccctgcgcatcctggtgcacgagctgcgggacttcccggcggccgaggactactgcctg
tggcgctccgagggcagggacccaccgtaccggcagcggctcttccacacactgctggcc
atgtacctccagcccggccccgccgcgcccgagctgaccgtggccgccacagacctcctg
aaccaccacgcggccgacttcgacgccgcccgggtcctgccgctgctgccgggcagctgg
tcggtgcagctcctgcacccgttcctgaccggggccgtcaggagcagcgtgcatgcccgc
aggaccactcaggtggctctgggcctggccaagtccgaaaacctgatctacaagtacgac
aagatgaagttgaaaggaagctcagttcagctctcggacaaaaaggtctgccagatgtgc
caaaatcccttttgtgagcctgtgtttgttagatatccaaatggtgggctcgtccacacc
cattgtgccaccagcagacacacgaaccccagctcccctggccccggcgctcggacttga

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