Ailuropoda melanoleuca (giant panda): 100474711
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Entry
100474711 CDS
T01329
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04151
PI3K-Akt signaling pathway
aml04510
Focal adhesion
aml04512
ECM-receptor interaction
aml04974
Protein digestion and absorption
aml05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100474711 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100474711 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100474711 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100474711 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100474711 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aml00536
]
100474711 (COL2A1)
Glycosaminoglycan binding proteins [BR:
aml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100474711 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100474711
NCBI-ProteinID:
XP_011224617
Ensembl:
ENSAMEG00000027152
UniProt:
A0A7N5JWS6
LinkDB
All DBs
Position
16:complement(38142916..38176986)
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AA seq
1487 aa
AA seq
DB search
MIRFGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPVCSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGADGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGAAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGTPGADGPPGRDGAAGVKGDRGEAGAVGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGDLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKNKDKKHIWFGETINGGFHFGYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTLIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcgatgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccgtctgctcaactgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacccggagatatcaaggatattgtaggacctaaagga
cctcctgggcctcagggacctgccggtgaacaaggacccagaggtgaccgtggtgacaaa
ggtgaaaagggtgcccctggacctcgtggcagagatggcgagcctgggacccctggaaat
cctgggccccctggtcctcctggcccccctggcccccctggccttggtggaaactttgct
gcccagatggctggaggatttgatgagaaggctggtggcgcccagatgggagtgatgcaa
gggccaatgggccccatgggacctcgaggacctccaggccctgcgggtgctcctggacct
caaggatttcaaggcaaccctggtgaacctggtgaacccggcgtctctggtcccatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgatgatggcgaagctggaaagcct
ggaaaatctggtgaaaggggcccccctggccctcagggtgctcgtggcttcccgggaacc
ccaggccttcctggtgtcaagggtcacagaggctacccaggtctagatggtgctaaggga
gaagccggtgctccaggtgtgaagggagagagtgggtcacccggcgagaatggttcccca
ggccccatgggtccccgcggcctgcccggtgagcgaggacggaccggccctgcgggtgcc
gcaggtgcccggggcaacgacggccaaccaggccccgcaggccctccgggtcccgtgggt
cctgccggcggtcctggcttccctggtgctcccggggccaagggtgaagctggccccact
ggtgctcgtggtcccgaaggcgctcaaggtcctcgtggtgaacctggtactcctgggtcc
cctgggccggctggtgcctccggtaaccccggagctgatggaattcccggagccaaagga
tctgctggtgctcctggcattgctggtgcccccggcttccctgggccccgtggtccacct
ggccctcaaggtgcaactgggcctctgggcccgaaaggtcagacgggcgagcctggtatt
gctggcttcaaaggtgaacaaggccccaagggagaacctggccctgctggtccccaagga
gcccctggtcctgctggtgaagaaggcaagagaggtgcccgtggagagcctggtggtgct
gggcccgttggtccccccggagagagaggtgctcctggcaaccgtggtttcccaggtcag
gatggtctggcaggtccaaagggagcccctggagagcgagggcccagcggccttgctggt
cccaaaggagccaacggtgaccctggccgtcctggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagct
cctggtgaagacggtcgccctggtcctccaggtcctcagggcgctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaacggcgagcctggcaaggctggtgagaag
ggactgcccggcgctcctggtctgagaggtcttcctggcaaagacggtgagacaggtgct
gcaggaccccccggacccgccggacctgctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaaacca
ggtgaccagggcgttcctggtgaagctggagcccccggcctcgtgggtcccaggggcgaa
cgaggtttcccaggcgaacgtggctctcccggggcccagggacttcagggtgcccgtggc
ctccctggcactcctggcacagacggtcccaaaggcgcatctggcccagctggcccccct
ggggctcagggccctccaggtctgcaagggatgcccggtgagagaggagcagctggcatc
gctgggcccaagggagacaggggtgacgttggtgagaaaggccccgagggagcccctgga
aaggatggtggacgaggcttgactggtcccatcggcccccctggccctgctggtgccaat
ggtgagaagggagaagttggacctcccggtcctgcaggagctgctggtgctcgtggcgcc
ccgggtgaacgcggagagactggaccccctgggcccgctggattcgcaggtcctcccggt
gctgacggccaaccaggtgccaagggcgagcaaggagaggctggccagaaaggtgatgct
ggtgccccgggtcctcagggcccctctggagctcccgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccaccggattccctgga
gctgctggccgcgtcggacccccaggctccaatggaaaccctgggccccctggtccccct
ggtccttctggaaaagatggtcccaaaggcgctcgtggagacagcggcccccctggccgc
gcgggtgaccctggcctccaaggtcctgccggaccccctggcgagaagggagagcctgga
gatgatggtccctctggtcccgatggtcctccaggtccccaaggtctggctggtcagagg
ggcatcgtcggtctgcccgggcagcgtggtgagagaggattccctggcttgcccggccca
tcgggtgagcctggcaagcagggagctcctggtgcatctggagaccgaggtccccccggc
cccgtgggtcctcctggcctgaccggtcctgctggcgaacctggacgagagggaacccct
ggtgctgacggcccccctggcagggatggtgctgctggagtcaagggtgaccgtggtgag
gctggcgctgtgggtgcccccggagcccccgggccccctggctctcctggccccgccggc
ccaactggaaagcagggagaccgaggagaagctggtgcacaaggccccatgggtcccgca
ggaccagctggagcccggggaatcccaggccctcaaggtccccggggtgacaaaggagaa
gctggagaggctggcgagagaggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcccggccctcccggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctagaggtcctcctggtcccgtcggtccctccggcaaagatggtgctaatggaatc
cctggtcccattggacctcctggtccccgtggacgttcaggcgaaacaggccccgcgggt
cctcctggaaaccctggaccccctggccctccaggaccccctggccctggcatcgacatg
tctgcctttgctggcctcggccagagagagaagggccctgaccccctgcagtacatgcgg
gctgaccaggcagccggcgacctgagacagcatgatgccgaggtggacgccacactcaag
tccctcaacaaccagattgagagcctccgcagccccgagggctcccgcaagaaccccgct
cgcacctgccgggacctgaaactctgccaccccgaatggaagagcggagactattggatt
gaccccaaccagggctgcaccttggacgccatgaaggttttctgcaacatggagaccggc
gagacctgcgtctaccccaacccagcgaacgttcccaagaagaactggtggagcagcaag
aacaaggacaagaaacatatctggtttggagaaaccatcaatggtggcttccacttcggc
tacggtgatgacaacctggctcccaacactgccaacgtccagatgaccttcctgcgcctg
ctgtccaccgagggctcccagaacatcacctaccactgcaagaacagcatcgcctacctg
gacgaagccgccggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag
atccgggccgagggcaacagcaggttcacgtacaccgtcctgaaggacggctgcacgaaa
cacaccggtaagtggggcaagactctgatcgagtaccggtcacagaagacctcgcgcctc
cccatcattgacattgcgcctatggacataggagggcccgagcaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
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