Ailuropoda melanoleuca (giant panda): 100474935
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Entry
100474935 CDS
T01329
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100474935 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100474935 (CNOT6L)
Enzymes [BR:
aml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100474935 (CNOT6L)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100474935 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100474935 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
100474935
NCBI-ProteinID:
XP_011217400
Ensembl:
ENSAMEG00000005570
LinkDB
All DBs
Position
11:49157586..49271693
Genome browser
AA seq
555 aa
AA seq
DB search
MRLIGMPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTA
LHLNDNYLSRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYE
LGRLFQLQTLGLKGNPLSQDILNLYQDPDGTRKLLNFMLDNLAVHPEQLPPRPWITLKER
DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQE
VETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFTLVQKHTV
EFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGTGMKPIHAADKQLLIVANAH
MHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVV
EYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNY
TFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHP
PLLPLVNGVHLPNRR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagactaatagggatgccaaaggaaaaatatgatcctccagatcctcgcagaatttat
accatcatgtcagcagaggaggtagccaatgggaaaaaatctcactgggcagaattagaa
atctcgggtagagtgcggagcttaagtacatcactttggtcattgacacacttgacagca
ctgcacctaaatgacaattaccttagtcgcattccacctgatattgccaagcttcataat
ctggtttacctggatctgtcatccaataaactcagaagtttaccagcagaactaggaaac
atggtgtctctcagggaattgcttttaaataacaatctgttacgggttttgccttatgaa
cttggtcggctcttccagctacaaactctaggtttgaaaggcaatcctttatcacaggat
attctcaatttataccaggacccagatggaacccgaaagctactgaacttcatgcttgac
aatcttgcagttcatccagagcagcttcctccgaggccatggattacattaaaagaacga
gaccaaattctgccatcagcatcattcacggttatgtgttacaatgtgttatgtgataaa
tacgccacccggcagctatacggctattgcccatcctgggcattaaactgggaatacagg
aaaaagggaattatggaagaaattgttaactgtgatgcagatatcattagtcttcaggaa
gtggaaacggagcaatacttcactctctttctgccagcattgaaggagcgtgggtatgat
ggatttttttctccaaagtcacgtgccaaaatcatgtctgagcaggagaaaaagcatgtg
gacggttgtgcaatattcttcaaaacagaaaaatttacattggtgcaaaagcatacagtg
gaatttaaccaagtggcaatggctaattcagatggatccgaagctatgctgaacagagtg
atgacaaaagataatattggtgtagctgtggtattagaggtccacaaagaactatttgga
acaggtatgaagcctattcatgctgcagataaacagctgcttatagtggcaaatgcccac
atgcattgggacccagagtattctgatgtgaaactcatccagaccatgatgtttgtctca
gaggttaaaaacattctggagaaagcctctagtaggcctggcagcccaaccgcagatcct
aattccatcccgctggtgctatgtgcagatcttaactcattgccagattcaggtgtcgtg
gaatatttgagcaatggaggagtagctgacaaccataaagacttcaaggaactaaggtat
aatgagtgtcttatgaacttcagctgcaatgggaagaatggaagctcagaagggagaatc
acacatggcttccaactgaagagcgcctatgaaaataacttgatgccttacaccaattac
acctttgatttcaaaggcgtgattgactacattttctattccaagactcatatgaacgtg
cttggtgtcctggggcctttagatcctcaatggctggttgagaacaacatcactgggtgt
ccacaccctcacatcccttcagaccacttctcactgttaacacaacttgaactccaccct
ccacttctgcctcttgtcaatggtgttcacttgcctaatcggaggtag
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