Ailuropoda melanoleuca (giant panda): 100474951
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Entry
100474951 CDS
T01329
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100474951 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aml01009
]
100474951 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aml04515
]
100474951 (PCDH20)
Protein phosphatases and associated proteins [BR:
aml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100474951 (PCDH20)
Cell adhesion molecules [BR:
aml04515
]
Cadherins
Protocadherins
100474951 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
100474951
NCBI-ProteinID:
XP_002916495
Ensembl:
ENSAMEG00000000079
UniProt:
D2H481
G1KZN0
LinkDB
All DBs
Position
7:complement(97726878..97732765)
Genome browser
AA seq
952 aa
AA seq
DB search
MRGRGNARSSRALAVSWRPATWHPRPDMGRLSRPRSSTIHRNLPHLFLFFLFVGPFNCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLVPRAAGRQDQLSQLPERTVAERNPPLSFS
LASRGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGAAWGGSISIASSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPINTRLAIEHPAMDPDI
GTNGVQTYRLLDYHRMFTLDVEENENGERTPYLIVMGLLDRETQDQYVSIIIAEDGGSPP
LLGSATLTIGITDINDNCPLFADSQINVTVFGNATVGTPVAAVQAVDRDLGTNAQITYAY
SQKVPQASKDLFHLDETTGVIKLFSKIGGSVLQTHKLTILANGPGCIPAVTTALVTIIKV
IFRPPEIVPRYIANEVDGIVYLKELEPINTPIAFFTIRDPEGKYKVNCYLDSEGPFRLSP
YKPYNNEYLLETTKPMDYELQQFYEIVVVAWNSEGFHVKKIIKVQLLDDNDNAPVFLQPL
LELTIEENNAPNAFLTKLYATDADSGERGQVSYFLGPDAPSYFSLDRVTGILTVSTQLDR
EEKEKYRYTVRAVDSGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVEPVSCVPTLVALSVISLG
SITLVTGMGIYICLRRGKKHHREDENLEVQIPLKGKIDLHMREKKPMAISNI
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcagagggaatgcgcgcagctcgcgggccctggcagtgagctggcgcccggcg
acctggcacccgcgcccggatatggggcgtctaagtcgtcccaggagcagcaccatccac
agaaacctgccgcatctgtttctgtttttcctcttcgtgggacccttcaactgcctcgcg
agttacagccgggccacggagcttctgtacagcctgaacgagggactgcccgcgggggtg
ctcatcggcagcctggccgaggacctacggctggtgccccgcgccgctgggaggcaggac
cagctgtcgcagctgccagagcgcaccgtcgctgagcggaacccccctctctccttcagc
ctggcctcccggggacttagcggccagtacgtgaccctggacaaccgctccggcgagctg
cacacttctgcccaggagatcgaccgggaggccctgtgtcttgaaggaggtggaggagcc
gcctggggcggcagcatttccatcgcctcctccccttcctctgattcttgtcttttgctt
ttggatgtactggtcctgcctcaggaatactttaggtttgtgaaggtgaaaatcgctatc
cgggacatcaatgacaatgccccgcagttccccgtttcccaaatctcggtttgggtccca
gaaaatgcacctataaacacccggctcgccatagagcatcctgccatggacccagatata
ggcactaatggggtgcagacctaccgcttactggactaccatcgcatgttcaccctggac
gtggaggagaatgagaatggggagcgcactccctacctaattgtcatgggactgttggat
agggagacccaggaccagtatgtgagcatcatcatagcggaggacggtgggtctccacca
ctgctgggcagcgccaccctcaccatcggcataactgacattaatgacaattgccctctc
ttcgcagactcacaaatcaatgtcactgtgtttgggaatgctacagtgggcacaccggtt
gcagctgtccaggctgtggacagagacttgggaaccaatgctcagatcacctacgcttac
agccagaaagttccacaagcatccaaggatttattccatctggacgaaaccacgggagtc
atcaaacttttcagtaagattgggggaagtgttctgcaaacgcacaagctcaccatcctt
gctaacgggccaggctgcatccctgctgtgaccacggccctggtgaccattatcaaagtc
attttcagaccacctgaaattgttcctcgttatatagcaaatgaggtagatggtattgtt
tacctgaaagaactggaacccattaacactccaattgcattcttcaccataagagatcca
gaaggtaaatacaaggtgaactgctacctggacagtgaaggaccatttagattatcaccg
tacaaaccgtacaataacgaatatttgctggaaaccacaaaaccaatggactatgagcta
cagcagttctatgaaatagtggtggtggcatggaactctgagggattccatgtcaaaaaa
attattaaagtgcaacttttagatgacaatgacaatgctcccgttttcctgcaacccttg
ctggaactaaccattgaagaaaacaacgcacccaatgcctttttaactaagctgtacgcg
acggatgctgacagtggagagagaggccaggtttcctatttcctgggacctgatgccccc
tcgtatttttccttagaccgtgtcacaggaattctgacagtttccactcagctggaccga
gaagagaaagaaaagtacaggtacacagtcagagctgttgactctggaaagccacccaga
gaatcagtagccactgtggctctcaccgtgctggataaaaatgacaacagccctaggttc
atcaacaaagacttcagcttttttgtgccagaaaactttccaggatatggtgaaattggg
gtcattagtgtcacagatgccgatgctggacgaaatggatgggttgccctctcagtggtg
aaccagagtgatatttttgtcatagacacaggaaagggcatgttaagagctaaagtctct
ttggacagagagcagcaaagctcctacactttgtgggtcgaagctgttgatgggggtgag
cctgccctctcttcgactgcaaaaatcacaattctccttctagatatcaatgacaaccct
cctctggttttatttcctcagtccaacatgtcctacctgttggtactgccttctactctc
cccggttcccctgttacagaggtctatgctgttgacaaagacacaggcatgaacgccgtc
atagcttacagcatcataggaagaagaggtcctaggcctgagtcctttaggattgaccct
aaaactggcaacattactttggaagaggcattgctgcagacagactatggactccatcgt
ttactggtgaaagtgagtgaccatggttatcctgaacctctccattccacagtcatggtg
aacctgtttgtcaatgacactgtcagtaacgagagctacattgagagtcttttaagaaag
gaaccagaaatcaatatagaggagaaagaaccacagatctcaatagaaccgactcatagg
aaagtcgagcctgtgtcctgtgtgcccactctagtagctctgtctgtgataagcttgggc
tctatcacacttgtaacagggatgggcatatacatctgtttaaggagggggaaaaagcat
cacagggaagacgaaaatttggaagtacaaattccactcaaaggaaaaattgacttgcat
atgagagaaaagaaaccaatggctatttctaatatttga
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