Ailuropoda melanoleuca (giant panda): 100475056
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Entry
100475056 CDS
T01329
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100475056 (TNRC6C)
03036 Chromosome and associated proteins [BR:
aml03036
]
100475056 (TNRC6C)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100475056 (TNRC6C)
Chromosome and associated proteins [BR:
aml03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100475056 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA
RRM_1
RRM_occluded
THOC7
Motif
Other DBs
NCBI-GeneID:
100475056
NCBI-ProteinID:
XP_002918420
Ensembl:
ENSAMEG00000013756
LinkDB
All DBs
Position
13:41814944..41915891
Genome browser
AA seq
1930 aa
AA seq
DB search
MEEKKKKKQEEKKKKEGAQKKAADQKTKVPEPTKTCSSQPQPAGTSTSTSTSTLSSSSNG
KRVSASSQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGALTSVSPTQGAGPAGVSP
PPLPGAGAQQHPSKLQPDLSHGGLADHYESSHWGQQPTYRGEASSSWDKVIIDRTDKEAW
PSITGAETESASECTTDTDSASNCGSENSSMATGSAQGTFTGHTKKTNGNNGTNGALVQS
PSNQSALGAGGANGNGNGARVWGVATGSSSGPAHCSLSGGDGKMDNMIGDGRSQNCWGAS
NSNAGINLNLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQNTGNQNGNPTGTLGA
WGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPVNAMQTNGLPNWGM
AVGMGAIIPPHLQGLPGANGSSVSQVSGSGGEGISSSVWGLSPGNPATGSSNSGFNQGNG
DTVNSALSAKQNGSSSAVQKEGSGGNAWDSGPPAGPGLLAWGRGSGNNSNVSHIHSGAWG
HPSRSTSNGVNGEWGKPPNQHSNSDINGKGSTGWDSPSVSSQNPAIQPGSEHINSWAKAA
SSGTTASEGSSDGSGSHNEGSSGREGAEGRRRDKGMIDQGHIQLPRNDLDPRVLSNTGWG
QTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQPSNSGGKSDGSIANSTNTSSVSGWA
SAPPAAGPANTGWGDSSNKAPNGPGVWGDSISSTAVNNAAAAAKSGHAWSGAVNQEDKPP
TWGEPQKPKSQNWGDGQKPNPAWSAGGGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSG
WNDTTRSGTSGWGNGTNAKVNPGTNWGESLKPGPQQNWAGKPQDNNVSNWGGAASVKQTG
TGWIGGPVPVKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSNYNNKTVNMWDRNN
PGVQSSTTAAATTTTTSSSTDMVETPPPHQASTQLSRSPLLGPVSAGWGEMPNVHSKAES
SWGEPSSPSALVDNGTAAWGKPPSSGSGWGDQPAEPPVTFGRASAPAAAPALCKPASKSM
QEGWGSGGDDMNLGTSQWEDEEGGMWNNAASQESTSSCSSWGNAPKKGLPKGMKTSGKQD
EAWIMSRLMKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVDKRGLGVTDYNGV
VTKALGCRPPVSKDSSGDRPTFLDKDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQALGG
IASGLGMQNLNSSRQMPSGNLGMFGSGAAQARTMQQPPQPPVQPLSSSQPSLRAQVPPFL
SPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRN
VSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKPPPPPPHLSLHPSAGKSAMDSFP
PHPQAPGLPDLQTKEPQSSPSTFAPYPLAGLNPNMNVNSMDMTGGLSVKDPSQSQSRLPQ
WTHPNPMDNLPGAASPLDQNPSKHGAIPGGLSIGPPAKSSIDDSYGRYDLIQNSESPASP
PVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPT
INTTIQDVNRYLLKSGGSSPPSSQSAALPSSSAWPLSASGYSRSFSSIAPAPSIAGKLSD
IKSTWSSGPASHTQASLSHELWKVPRNTTAPTRPPPGLTNPKPSSTWGASPLGWTSSYSS
GSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLVTFHLNLTQGNAVVRYSSKE
EAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSTGTGQTRLGAAG
SSHGLVRSDTGHWSAPCLAGKGSSDLLWGGVPQYSSSLWGPPSSDDGRVIGSPTPLNTLL
PGDLLSGESI
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaa
aaggctgctgatcaaaaaaccaaagtgccagaacctactaagacctgttcaagccagccc
caacctgccggtaccagtaccagcacttccaccagcactctgtccagcagcagcaatggc
aaacgtgtgtctgccagcagccagcagccagctgcatcccgttacctgcctcgcgaggtg
cctccacgcttccgccagcaagaacagaagcagctgttaaagagaggtcagccattgcct
acaggggctctgaccagtgtgagcccgacccagggtgctgggcctgcaggggtaagccct
cctcccctccctggagccggagcacagcagcatcccagtaagctccaaccagatctcagt
cacggtggattggcagatcactatgaaagttcccactggggacagcagcccacgtacaga
ggtgaagccagcagcagctgggataaagtgataatagacaggactgacaaggaggcgtgg
ccttccatcacaggagcagagactgaatctgcctcagaatgtactacagacactgactct
gcctccaactgtggctcagagaacagtagcatggctacagggagtgcccagggcaccttc
actggacataccaagaagacaaatggcaataatggcaccaacggtgcactcgtccaaagc
ccttctaatcagagtgcccttggagcagggggcgccaacggtaatggaaatggagccaga
gtgtggggcgtagccacaggctccagctccggcccagctcactgctctctcagtggtggg
gatgggaaaatggacaacatgatcggagatgggagaagtcagaattgctggggtgcttcc
aactccaacgccggcattaatcttaaccttaaccctaatgccaacccagctgcctggcct
gtacttggacatgaaggaactgtggcgacaggcaacccttccagtatttgtagtccggtc
agtgccataggtcaaaatacgggcaaccagaacgggaacccaacaggcactttaggtgct
tggggaaacttgctgccgcaagagagcacagaaccacaaacgtccacttctcagaatgtg
tctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccatg
aactcttcaccaaaccctgtcaatgcaatgcagacaaacggactgccaaactggggcatg
gctgttggtatgggggccatcatcccgccccacctgcaaggccttcctggtgctaacgga
tcatccgtttctcaagtcagtgggagcggtggcgaaggaatcagcagttctgtgtgggga
ctgtccccaggtaaccctgccacaggaagtagcaattctgggttcaatcaggggaatgga
gacactgtgaactcagcattgagtgctaaacaaaatggatccagcagtgctgtgcagaag
gaaggaagtggaggaaacgcctgggactctggtcctcctgctggtcctggactcctcgcc
tggggacggggcagtggcaacaacagcaacgttagtcatatccattcgggggcttggggc
caccccagccggagcacctctaacggtgtgaatggggagtggggcaagcccccaaaccag
cattccaacagtgacatcaatgggaaaggatcaacagggtgggacagtccgagtgttagc
agccagaatcctgccatacagcctggcagtgaacacataaactcttgggccaaagctgca
tcttctggaacgacagcaagtgaaggaagtagtgatggttccggcagtcacaatgaagga
agctctgggagggaaggagcagaaggccgaaggcgagataaagggatgatagaccaaggg
cacatccagttgccaaggaacgatcttgacccaagagttctgtctaatactggttgggga
cagactccagtaaagcaaaacactgcctgggaatttgaagagtcccctaggtctgagaga
aaaaatgacaatgggacagaggcctggggctgtgccgctactcagccttcaaactcaggg
gggaagagtgatgggtccatcgcgaacagtacaaatacctcttcagtgtccgggtgggcc
agcgcaccgccggctgctgggccagcaaacacaggctggggagacagcagcaacaaagcg
ccaaatggcccaggggtttggggggactcgataagctctactgctgttaataatgctgct
gccgccgccaagagtggccacgcttggagtggggccgtaaatcaggaggacaagccgccc
acctggggggagccccagaaacccaaatctcagaactggggagacggacaaaaacctaat
ccagcctggagtgcaggagggggagattgggcagattcgtcttctgtcctcggacacttg
ggggatgggaaaaaaaatggctccggatgggatgctgacagtaatcggtcagggtctggt
tggaatgatactaccaggtctgggaccagtggctggggtaatggcacaaatgcaaaggtg
aatccagggacaaactggggagagtctttgaaacctggcccccaacagaactgggcgggc
aaaccccaagacaacaatgtgagtaactggggaggagccgcttccgttaaacagacagga
actgggtggatcgggggaccagtccctgtcaaacaaaaggacagcagtgaggccacgggc
tgggaggaaccttctccaccatccattcgacgcaaaatggaaattgatgatggtacctca
gcttggggtgacccaagcaactacaacaataaaactgtaaacatgtgggatagaaacaac
ccaggcgtgcagagcagtaccacggccgccgccaccaccaccacgacgagcagcagcacg
gacatggtcgagacgccaccgccgcaccaggccagcacccagctgagtcggtcgccgctg
ctcggtccagtctcagcgggctggggagagatgcctaacgtccactcaaaggctgagagc
tcctggggagagccgtcctccccctccgccctggttgacaacggcactgcagcgtggggc
aagccgcccagcagtggcagcggatggggggaccagcccgcagagccgccggtgacattc
gggagagccagcgcccccgccgccgccccagccctgtgcaaaccagcttcaaaatctatg
caagaaggctggggcagtggtggggacgacatgaacctcggtaccagtcagtgggaagac
gaagaaggaggcatgtggaacaatgctgcttcccaagaaagcacctcctcctgcagctcc
tgggggaacgcccccaaaaaaggactcccaaagggcatgaaaacgtctggcaagcaggac
gaggcctggatcatgagccggctgatgaaacaactcacagacatgggcttcccgagagag
ccagctgaagaggccttgaagagtaacaatatgaatcttgaccaggccatgagcgccctg
ctggaaaagaaggtggacgtggacaagcgtggactgggagtgaccgactacaatggagtg
gtcaccaaagcccttggctgccgcccaccagtctccaaagactcttccggggaccgcccc
acctttctcgacaaggacggcggcctagtggaagagcccacgacttcaccgtttttgcct
tcaccaagcctgaagctccccctttcaaacagtgcactccctaatcaggccctgggtggg
attgcctcagggctgggcatgcaaaacttgaattcttctagacagatgccgagtggcaat
ctgggcatgttcggcagcggagcagcacaagccaggaccatgcaacagccgccgcagccc
cccgtgcagcctctgagctcctcccagcccagcctccgtgctcaagtgcctccgtttcta
tcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcaaccct
gcactattgacctcgccaatcaatcctcagcatatgacgatgttgaaccagctctatcag
ctgcagctggcataccaacgtttacaaatccagcagcagatgctacaggctcagcgtaat
gtttccggacccatgagacaacaggagcagcaagttgcgcgcacaatcactaacctgcag
cagcagatccagcagcaccagcgccagctggcccaggccctgctcgtgaagccgccgccg
cccccgccgcacctgtctctgcacccctctgcaggcaaatcggccatggacagcttcccc
ccccacccccaggcccccggcctgcctgacctgcagaccaaagagccgcagtcttcaccc
agcacctttgctccttaccctctcgctggactgaacccaaacatgaatgtcaacagcatg
gacatgactggtggtttgtcggtgaaggacccgtctcagtcccagtcacgcctccctcag
tggacacaccccaacccgatggacaacttacccggtgctgcttctcccctggatcagaac
cccagcaagcatggtgctatccctggaggtctaagcattgggcctccagctaagtcctcc
atcgacgactcctatggccggtacgatttaatccagaacagtgagtcaccagccagtcct
cctgtagctgttccccatagctggtcacgtgccaaatctgacagtgataaaatctccaat
ggctccagcatcaactggcccccagaattccatcctggagttccatggaaaggacttcag
aatatagaccccgagaacgaccccgacgtcactcccggaagtgtccccaccgggcctacc
atcaacaccaccatacaggacgtcaaccgctacctcctcaagagtggagggtcctcccca
ccgtcatctcagagtgccgcgctgccttcctcgagtgcctggccgctcagtgcctccggc
tacagtcgctctttcagcagcatcgcgcccgcgcccagcatcgcaggtaaactgtcagac
attaaatcgacgtggtcctctggccctgcctcccacacgcaagcctctctttctcatgaa
ctgtggaaggtgcccagaaacactactgcacccacaaggccacctccagggttaaccaat
cccaagccttcctcgacctggggagccagtcccctcggctggaccagctcttactcctcg
ggttccgcctggagcacggacacctcaggacggacaagcagctggctcgtcctccgcaac
ctcacgccccagatcgacggctctaccctgcggacgctgtgtttgcagcacgggcctctc
gtcacattccacctgaacctgactcaaggcaacgccgtggtccgctacagctccaaggag
gaagccgccaaggcccagaagtccctgcacatgtgtgttctgggaaacactaccatcttg
gccgagtttgctggcgaagaagaggtgaaccgtttcttagcccaaggccaagcactgccg
cccacctccagctggcagtccagcaccggcaccggccagacgcgcctgggtgccgcgggc
agctcccacggcctggtgcggagcgacactggccactggagtgccccgtgtctggcaggc
aaagggagcagtgacctgctgtggggtggggtcccccagtactcgagcagcctgtggggc
ccacccagcagtgacgacggcagggtgatcggaagccccaccccgctgaacactctgctt
cccggggaccttctcagcggggaatccatctag
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integrated database retrieval system
