Ailuropoda melanoleuca (giant panda): 100477759
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Entry
100477759 CDS
T01329
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aml03021
]
100477759 (SCAF4)
03041 Spliceosome [BR:
aml03041
]
100477759 (SCAF4)
Transcription machinery [BR:
aml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100477759 (SCAF4)
Spliceosome [BR:
aml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
100477759 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100477759
NCBI-ProteinID:
XP_034512222
Ensembl:
ENSAMEG00000014987
UniProt:
G1M8Z3
LinkDB
All DBs
Position
1:12457703..12513722
Genome browser
AA seq
1132 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSEPPQATTNSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPAQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEESKKEDAAAAAAAATTPAVAVAPPAP
SAAAPTAAPAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMTIQQDPVHHQVPLPPN
GQMPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQASFQAQNEPLTQKAHQEMEVEQPCIQE
VKRHLSDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRD
REKERERRQKGLPQIKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPR
GCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIP
WDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGADTSHTEPVSPIPKPLP
VPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPTFTPPLGIPPPGFGPGVPPPPPPPP
FLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGN
PIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQ
APSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFGMPPPH
GMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDRDGRQPQPQQPPPPQPQQPPPAQQPPP
AQQQAQPFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSSRERREWGR
RSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRRDKEENRGKEKPEVTDRAGGNKTAEP
PISQVGNVDTVSELDKGESESAVVKSSEELPAEATSSVEPEKDSGSAAEAPR
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttttcacttatggatatgaaaccaccc
atctctcgagccaagatgattcttatcactaaagctgctattaaagctattaagctttat
aagcatgtagttcaaatcgtagaaaagttcatcaagaagtgtaaaccggagtacaaggtt
ccgggattatatgtaatcgactcaattgtgcgacagtctcgtcatcagtttggaactgat
aaagatgtttttgggccaagattctctaaaaacataactgccacattccaatatttatat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctgaacctttggcaaaaaaat
ggagtattcaaaattgaaattattcagcctcttttggacatggctgcaggaaccagtaat
gctgccccagtagcagaaaatgttactaataatgaaggttcacctccacctccggttaaa
gtttcttctgaacccccccaagccactacaaactctgtaccaactgtaccacagttgccc
agctctgatgcttttgctgctgtggcccaactgtttcagacaactcaaggtcaacagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctccggccattgacaat
gctgtgatggctcaggtccaggctatcacagctcagttaaagacagctcctgcacagcca
ccggaacaaaaagctgctttccccccgcctgagcaaaaaactgcatttgacaagaagcta
cttgatagatttgattatgatgatgagccagaagctgtggaagaatcaaagaaggaagat
gccgccgccgctgccgccgccgccaccacacctgctgtggctgttgcgcctccagcgccc
tccgccgctgcacccaccgccgcacctgctgcttcccctccgcaggcaccctttgggttt
cctggagatggcatgcagcagccagcatatacacaacatcaaaatatggatcagtttcag
cctcgaatgatgacaatacagcaggatccagtgcaccatcaggttccacttcctcctaat
ggacagatgccaggatttggccttcttcctacacctccatttcctcccatggctcagtct
gtgattcctccaactccacctgtccagcagcctttccaagcttcttttcaggcacagaat
gaaccacttacacagaaggcacatcaggaaatggaagtagaacaaccttgtattcaagag
gttaagcggcacttgtctgataacagaaagtcaagatctaggtcagcatccaggtcacca
aaaagaaggcgatctcgatctggctctagatctcgaaggtcccgtcatcgacgttctcga
tctcggtccagagatagacgccgacattctcctagatctcggtcccaagaaaggcgagat
cgagaaaaagaaagagaacgccgacaaaaaggccttcctcaaatcaaaccagaaactgcg
agtgtttgtagtactacactctgggtgggacagctggacaaaaggactactcaacaggat
gttgccagtcttttagaagagtttggtccaattgaatcaattaatatgattcctcccaga
ggttgtgcctatattgttatggttcataggcaagatgcttatcgtgccctgcagaaactg
agccgaggaaactataaagtgaaccagaaatccataaagattgcctgggctttaaacaaa
ggaataaaggcagattataagcagtattgggatgtagaactgggtgttacttatattcca
tgggacaaagtcaagcctgaagaactggagagtttttgtgaaggaggaatgttggacagt
gatacacttaatccagattggaagggaattcccaagaagcatgaaaatgaggttgctcaa
aatggaggggccgacacctcacatacagaaccagtatcacccatacctaaacctttacca
gtgcctgtccctcctattcctgtccctgcacctataacagtgccacctccacaggtccca
ccacatcagccaggtcctcctgtagttggtgctctccagccacccactttcacgcctccc
ttgggcattccccctccaggttttggtcctggtgttcctcctccacctcctcctccacca
tttttgcgcccaggatttaacccgatgcatttaccaccaggttttcttcctcctggaccc
ccacctcctataactccaccagtatccattcctcctcctcacactccaccaataagcatc
ccaaactctactatcgctggtataaatgaagacactacaaaagacttatctattggaaat
cccattccaacagtggtgtctggggctagaggaaacgccgagtctggtgacagtgtgaaa
atgtatggctctgctgtgccacctgctgcacccacgaatctgcccacccctcctgtaacc
cagcctgtttcacttcttggtactcaaggagttgcacctggtcctgtaattgggctccag
gcaccatccactggtcttcttggtgcgagacctggcctgatcccacttcagcgccctccg
ggaatgcctccgcctcacttacagcgatttcctttgatgccacctcgtcccatgccaccg
catatgatgcatagaggtccacctccaggaccagggggctttggaatgcctccacctcat
ggaatgaaaggcccctttccaccgcatggcccctttgttaggcctggcggaatgccaggg
cttgggggcccggggccaggcccagggggtcccgaagacagagatggaaggcagccgcag
ccgcagcagccgcccccaccgcagccgcagcagccgccaccagcgcagcagccgccacca
gcgcagcagcaagcacagccgtttagaaatgataacaggcagcagttcaattcaggtaga
gaccaagagaggtttggaagaagatcttttggaaatagggtggaaaatgaccgggaacgg
tatgggaaccgtaatgatgatagagataatagtagtcgtgaaaggagagagtggggaaga
aggagccctgaccgggacaggcacagagacttggaagagagaaatagacgctctagcggg
catcgagacagagagagagattctagagatagagagtctcgtagagataaggaagagaac
cgaggaaaggagaagcctgaggtgacagacagggcaggtggtaacaaaaccgctgaacct
cccattagccaagtgggaaatgtagacactgtttcagaacttgataagggggagtctgag
tctgcagttgtaaaatcttctgaagagttacctgctgaggctacctcatccgttgaaccc
gaaaaggattctggctcagcagcagaggctcctcgttag
DBGET
integrated database retrieval system
