Ailuropoda melanoleuca (giant panda): 100477819
Help
Entry
100477819 CDS
T01329
Symbol
SF3B1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100477819 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aml03041
]
100477819 (SF3B1)
03036 Chromosome and associated proteins [BR:
aml03036
]
100477819 (SF3B1)
Spliceosome [BR:
aml03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100477819 (SF3B1)
Complex B
100477819 (SF3B1)
Complex C
U2 SnRNP specific factors
100477819 (SF3B1)
Chromosome and associated proteins [BR:
aml03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100477819 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
100477819
NCBI-ProteinID:
XP_002920073
Ensembl:
ENSAMEG00000013809
LinkDB
All DBs
Position
2:complement(162391457..162425926)
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAXNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacaggttattatgac
caggaaatttatggtggaagtgacagccgatttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccgggatatcatgctcctgtggcattgcttaatgatataccacaatcaacagaacag
tatgatccattcgctgagcaccgacctccaaagattgctgaccgggaggatgaatacaaa
aagcacaggcggaccatgataatatccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcagcagctagcagaaaaagctaaagctggagaa
ctaaaagttgtcaatggagcagcagcgtcccaacctccctcaaaacgaaaacggcgttgg
gatcaaacggctgatcagactcctggtgccactcccaaaaagctgtcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgagacaccaggtcgtgcaaag
ggaagtgagactcctggagcaaccccaggctcaaaaatatgggatcctacccctagtcac
acaccagcgggagctgctactcctggacgcggggatacaccaggccatgcaacaccaggc
catggaggcgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagcggatgggctgagactcctcgaacagatcgaggtgga
gattcaattggtgaaacaccaactcctggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagccagatgggtggaagcactcctgttctgacccctggaaagacaccaatt
ggcacaccagctnngaacatggctacccctactccaggtcacataatgagtatgactcct
gaacagcttcaggcttggcggtgggaaagagaaattgatgagagaaaccgcccactttct
gatgaagaattagatgctatgttcccagagggatataaggtacttccccctccagctggt
tatgttcctattcgaactccagctcgaaagctgacagcaactccaacacctttgggcggc
atgactggtttccacatgcaaactgaagatagaactatgaaaagtgttaatgaccaacca
tctggaaatcttccatttttaaaacccgatgatattcagtactttgataaacttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaataatgaagctg
cttttaaaaattaagaatggaacacctccaatgagaaaggccgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttatttaatcagattcttcctctcctgatg
tctcctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatcgaatatta
tacaaacttgatgacttagttcgaccgtatgtgcacaagatccttgtggtcattgaacca
ttgttgattgatgaagattactatgctagagtggaaggtcgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatctctaccatgagacctgatatagataacatg
gatgagtacgtccgtaacacaacagctagagcttttgctgttgtagcctctgccctgggc
attccttcattgttgcccttcttaaaagctgtgtgtaaaagcaagaagtcctggcaagcg
agacacactggtattaagattgtacagcagatagctattcttatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcattgagcatggtcttgtggatgagcaacagaaa
gttcggaccattagtgctttggccattgctgccttggctgaagccgcaactccatatggt
atcgaatcttttgattctgtgttaaagcctctatggaagggtatccgccaacacagagga
aagggtctggctgctttcttaaaagctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaggtgatgttaatccttattcgagaatttcaatctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagattcttcctcctttttttaaacacttctggcaa
cacagaatggctttggatagaagaaattaccgacagttagttgatactaccgtggagttg
gcaaacaaagtaggtgcggcagaaattatatccaggattgtggatgatctgaaagatgaa
gctgaacagtacagaaaaatggtgatggagacaattgagaaaattatgggcaacttggga
gcagcagatattgatcataaacttgaagaacagctgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaatggctttggcacagtggtcaatgct
cttggcaaacgagtcaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatccgcaaaagttaggcaacaggcagctgacttgatctctcgaactgctgtt
gtcatgaagacttgccaagaggaaaaattgatggggcacttgggtgttgttttgtacgaa
tatttgggtgaagagtaccctgaagtattgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgactccaccaattaaagatctcctgcctagactc
acccccatcttaaagaacaggcatgaaaaagtccaagagaattgtattgatcttgttgga
cgtattgctgataggggagctgaatatgtgtctgcaagagaatggatgaggatttgcttt
gagcttttggaactcttaaaagctcacaaaaaagctattcgtagagccacagtcaacaca
tttggctacattgcaaaggccattggccctcatgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagagtttgtaccactgtagcgatagctattgtcgcc
gaaacgtgttcacccttcacagtactacctgccttaatgaatgaatacagagttcctgag
ctgaatgttcaaaatggagtgttaaaatcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtaacaccattacttgaagatgctttaatggatagg
gaccttgtgcacaggcagacggctagtgcggtggtgcagcacatgtcacttggggtttat
ggatttggttgtgaagattcactgaatcacttgttaaactatgtatggcccaatgtgttt
gagacatctccccatgtaattcaggcagttatgggagccctggagggcctgagagttgct
attggaccatgtagaatgttgcagtattgtttacagggtttgtttcacccggcccggaaa
gtcagagacgtgtattggaaaatttacaactccatctacattggttcacaggatgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttataa
DBGET
integrated database retrieval system
