Ailuropoda melanoleuca (giant panda): 100478660
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Entry
100478660 CDS
T01329
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04151
PI3K-Akt signaling pathway
aml04382
Cornified envelope formation
aml04510
Focal adhesion
aml04512
ECM-receptor interaction
aml04820
Cytoskeleton in muscle cells
aml04926
Relaxin signaling pathway
aml04933
AGE-RAGE signaling pathway in diabetic complications
aml04974
Protein digestion and absorption
aml05146
Amoebiasis
aml05165
Human papillomavirus infection
aml05200
Pathways in cancer
aml05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100478660 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100478660 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100478660 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100478660 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100478660 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
100478660 (COL4A3)
09158 Development and regeneration
04382 Cornified envelope formation
100478660 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100478660 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
100478660 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100478660 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
100478660 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100478660 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aml04147
]
100478660 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
aml00536
]
100478660 (COL4A3)
Exosome [BR:
aml04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100478660 (COL4A3)
Glycosaminoglycan binding proteins [BR:
aml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100478660 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100478660
NCBI-ProteinID:
XP_034498481
LinkDB
All DBs
Position
2:187989363..188116071
Genome browser
AA seq
1445 aa
AA seq
DB search
MSPRTAPRPPALLLPLLLVLLAAAPTRGKGCVCKDKGQCFCDGIKGEKGEKGFPGPVGSP
GQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGVRGITGLPGFSGPPGLPGTPGHPGPYGPA
GIPGCNGSKVCTSYTGRWLGNILWNESIKGKEEREVQGSSRPGLRGTPGPPGVKGSKGEQ
GPPGKNAVGPPGSPGCPGSPGPIGLPGYPGPPGGIVFRQGPPGDGGLPGLVGFPGIPGVD
GPKGEPGLLCIQCPCIPGPPGLPGLPGLDGIKGIPGGQGAGGVKGNPGYPGSVGLPGFPG
FPGAPGGPGLKGEKGEAPQPEGEVGASGDPGLRGQPGRRGLDGIPGTPGIKGSPGPKGEP
ALSGEKGDQGPPGDPGTPGSPGPAGPPGPPNYGPQGEPGPKGTQGIPGAPGPPGEAGPKG
EFSVSTPVPGPPGPPGPSGRAGPQGPPGVPGSIGKCGDPGLPGPDGEPGIPGIGFPGPPG
PKGEQGFPGAKGAPGYPGEMGKPGSPGEPGLSGAKGEPGLAMPGEPGTPGFPGERGNSGE
NGEIGLPGPPGLPGIPGTRGVDGLQGDPGKPGPPGEKGSPGRCMVGPRGSQGLPGLNGLE
GQQGRRGETGPKGDPGIPGLDRSGFPGEAGPPGMPGHRGEMGQPGQKGYPGNPGFLGLPG
EKGMMGIMGYPGNTGPPGPPGNPGTPGQRGSFGIPGAKGEKGPPGAKGEKGDKGPRGPSQ
ISNLLGDKGEPGLKGFAGKPGEKGNRGIPGLPGFKGHEGPPGPPGPPGLRGDPGITGNPG
EPGPRGGPGSMGIMGVPGRKGHRGTLGLPGLTGRPGLPGVHGLRGDKGEPGYSAGTWPGP
PGPKGDSGLPGDMGRKGERGLPGTTGHSGPAGTEGAPGIPGSPGHPGKPGPDGDLGLKGI
KGLPGSPGVKGPPGPPGFLGPPGPVGMRGSQGRDGIPGPAGIKGEAGLLGAHPGPRGSPG
APGAKGDGGIPGLPGLPGRKGAVGDAGPRGPTGVMGLPGPPGFPGAIIPGQKGNRGPPGF
RGNPGEPGPPGPPGSHVRGIKGDKGLLGEPGPRGLPGTVGAEGPPGPPGAPGSPGLPGLR
GDPGFHGFPGVKGEKGNPGFLGPVGPPGQIGPKGPPGVRGDPGTIQIISLPGSPGPPGHA
GGPGMQGEPGPPGPPGILGPCGPRGKPGKDGRPGTPGPTGEKGSKGCKGEQGPPGSDGLP
GLKGKPGHIGPPAPETMMRGFIFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQAHGQ
DLGTLGSCLQRFTTMPFLFCNIDDVCNFASRNDYSYWLSTPAPMPTDMAPITGRALEPYI
SRCTVCEGPTNAIAIHSQTTDIPSCPNGWISLWKGFSFIMFTSAGSEGAGQALASPGSCL
EEFRASPFIECHGRGTCNYYSNSYSFWLASLNPQTMFRKPIPSTVKAGELEKIISRCRVC
MKRRQ
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgaggacggcgcccaggccgcccgcgctgctgctgccgctcctgctggtgctt
ctggcggcggcgcccacgagaggcaagggctgtgtctgtaaagacaaagggcagtgtttc
tgtgatgggatcaaaggggagaagggggagaaaggctttcctggacctgttggttctcct
ggccagaaaggatttccaggtcctgaaggcttgcctggaccacagggacccaagggctca
ccaggactcccaggactcactggtcccaaaggtgtaaggggaataactggattgccggga
ttttcaggtcctcctggacttccaggcaccccaggccatcctgggccttatggacctgct
ggcatcccaggatgcaatgggtctaaggtatgtacttcttacacaggaagatggttggga
aacattttgtggaatgaatcaatcaaggggaaggaggaaagagaagtccaagggtcatcg
aggcctggcctcagaggaacccccggacctccaggcgtgaaaggaagtaaaggggaacaa
gggcccccaggaaagaatgcagtgggtcctccggggtccccaggttgtcccggttcacca
ggccctatagggttgccgggatatccaggaccaccaggtggcatcgtttttcgccaaggt
ccacctggagatggtggactcccaggccttgtagggtttccaggaatcccaggagtcgat
gggcccaaaggggaacctggcctcttgtgcatacaatgtccttgcatcccagggcccccg
ggtctcccaggactgccaggcttggatggcataaaaggaataccaggaggacaaggggca
ggtggcgttaaaggaaacccagggtacccaggaagtgtgggtcttccaggatttccagga
ttcccgggggctccggggggtccaggacttaaaggagaaaaaggtgaagcacctcagcct
gagggagaagtaggtgcctcaggggaccccggactcagagggcaacctggaagaaggggc
ttggatggaattcctggaactcccgggatcaaaggatcaccaggacccaaaggtgaaccg
gccctgagtggtgagaagggggaccagggtcctccaggggatcctggcacccctgggtcc
ccaggacctgcaggaccacctggaccaccaaactatggaccacagggagagcctggtcca
aagggtacccaaggaattcctggagcccctggaccacctggagaagccggtcctaaagga
gaattcagtgtttcgacaccagtcccagggcccccaggacctccagggccttctggccgt
gctggcccccaaggtccacctggtgtccctggatccataggaaaatgtggtgatccgggt
cttcctgggcctgatggtgaaccaggaattccaggaattggcttccctgggccccctgga
cctaagggagaacaaggttttccaggagcaaaaggagcaccaggttatccaggagaaatg
gggaagcccgggtcacctggagaaccgggtctctcaggagccaagggagaaccaggacta
gccatgcctggagaaccaggaacaccaggttttccaggagaaagaggcaattctggggaa
aatggagaaattggactccctggacctccaggtctccccggaattccaggaaccagaggg
gttgatggactccaaggggatccagggaagcctggaccacctggagaaaaaggatctcct
ggaaggtgcatggtgggtcccaggggatcccagggacttccaggattaaacggattggaa
gggcagcaagggagaagaggtgaaacagggccaaagggagacccaggtattccaggcttg
gatagatcaggctttcctggagaagctggaccaccaggaatgccaggtcatcgaggtgaa
atgggacaaccaggtcaaaaaggatatccaggaaatccaggatttttaggattaccaggt
gaaaaaggaatgatgggaataatgggctatccgggaaatactggccctcctgggccccct
gggaacccaggcaccccaggacagaggggtagctttggaattccaggagcaaagggtgag
aaagggcccccaggagccaagggggaaaaaggagacaaaggacctcgggggccttctcaa
atatccaatttactgggggacaaaggagaaccaggcctcaaaggatttgctggaaagcct
ggtgagaaaggaaacagaggcattccggggttaccaggtttcaaaggacacgaagggcca
cctggaccaccgggtccaccaggcctcaggggagatccgggcatcactgggaatcctgga
gagccaggaccacgtggtgggccaggaagcatggggatcatgggggtgccaggtcgtaaa
ggacacaggggaactttgggactaccaggtttaactgggagaccgggcctcccaggtgtt
catggtctccgaggagataagggagagccaggttattcggcaggtacatggccaggacca
ccgggaccaaagggagactcaggattgccaggtgacatgggaaggaaaggagaaagaggg
ctacctggcaccactggacattcggggcctgctggaactgagggagcccctggaattccc
ggaagtcctggccacccaggaaagccgggccctgatggtgatttggggttaaaaggcatc
aaaggcttgcctggttctccaggagtcaaaggccctccaggacctccaggattcctagga
cctcctggaccggtgggtatgagaggcagccagggacgcgatggaattcctgggccggca
ggaataaagggagaagcaggtttgctgggggcacatccaggcccgagagggagccctggt
gctccaggagccaaaggagacgggggcatcccgggcttacctggcctcccaggcaggaaa
ggggcagtgggagatgcggggccacggggacccactggcgtgatgggactcccagggcca
ccaggttttcctggcgcaatcatccctggccagaaaggaaatcgaggcccaccaggcttc
agaggaaacccaggtgaacctggtcctccgggacctccagggagccacgtaagaggcatc
aaaggagataagggactcctgggtgagcctggccccagaggtctgcctggaactgtagga
gctgaggggccaccgggtccgccgggagcaccaggaagcccaggtctcccagggctcaga
ggtgatcctggattccatggatttccaggtgtgaaaggggagaagggcaatccaggattt
ctgggaccagttggacctccagggcaaattggaccaaaaggaccacctggtgtacgtgga
gaccctggcacgattcagatcatctcccttccaggaagcccagggccacctggccatgct
ggaggaccagggatgcaaggagaacccgggccaccagggccaccgggaatcctaggaccc
tgtgggccaagaggtaaaccaggcaaggatggaagaccaggaactcctgggccaactgga
gaaaaaggcagcaaaggctgtaaaggagagcaaggaccacctggatcagacggactgcca
ggcttgaaggggaaacctggacacattgggccacctgcacctgagacaatgatgagaggc
tttatcttcacccggcatagtcagaccacagcgattccctcctgtccagaagggacagag
ccgctctatagtgggttttctcttctttttgtacaaggaaatgaacaagcccatggacaa
gatctgggaactcttggcagctgcctgcagcggtttaccacaatgccgttcttgttctgt
aacatcgatgatgtatgtaattttgcatctcgaaatgactattcatactggttgtcaaca
ccagctccgatgccaacagacatggctccgattactggcagggccctggagccttacatt
agcagatgcactgtctgcgaaggtcctacgaatgccatagccattcacagccaaaccact
gacattccctcatgtcccaatggctggatttctctctggaaaggattttcatttatcatg
ttcacaagtgcgggttctgagggcgctggacaggcactggcctcccctggctcctgcctg
gaagaattccgagccagtccatttatagaatgtcacggaagaggaacgtgcaactactat
tcaaattcctacagtttctggttggcttcactaaacccccaaacgatgttcagaaaacct
attccatcaactgtgaaagctggggagttagaaaagataataagtcgctgtcgggtgtgc
atgaagagaagacaatga
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