Ailuropoda melanoleuca (giant panda): 100478756
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Entry
100478756 CDS
T01329
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100478756 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100478756 (PNLDC1)
Enzymes [BR:
aml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100478756 (PNLDC1)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100478756 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100478756
NCBI-ProteinID:
XP_034525295
Ensembl:
ENSAMEG00000015371
LinkDB
All DBs
Position
10:102251682..102270588
Genome browser
AA seq
547 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSCRQQISLFDLPSEWYLKTRRS
VQQFTICQIGLSVFSSIEGETNKYVAHSCNFFLFPTTFGILDSEFTFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWRVRRFSWFSPASHFHVPVFSSLDKDQIKVV
IDEVTRWLDSAEEGDWMTLPGIAGFQAFEVQLVLRQALPDIWTVLRDQGIIVKKVNKQHR
WYLENTSCDRASCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLP
ESYDQFKLNIHNLFPVLIDTKNVTRDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPEV
IHASKCEKYVETKYPHEAAYDAFLCGSVLLKVAHLLLWRVRGTGPMPEPSFPLYLDVLAP
YMNQVNLIRAGVPKINFSGPDCPSIRPPILLLHVRRWPEVSEQQVYWEFQNLCKFDVRRL
SRSQFLLLTNKFKDARSILKEYRGHPTLQVSLYRYWRHSPNINCLLQVCGVVTTWALLAL
LLGRPDL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctccctctgctgcaggagctggtcctg
ggcgccgacttcgtgggtttggacatagagttcacgggccttcgctctaacctgtcctgc
cgccagcagatcagtctttttgacttgccctcggagtggtatctaaagacccgccgtagt
gttcagcagttcaccatctgtcagattggattgtctgtgttctctagtattgaaggagag
acaaacaagtatgtagcccattcgtgtaacttctttctcttcccgacgacatttgggatc
ttggattcagaattcactttccaggcttctagtgttcagtttttgaatcagtatggcttc
gactacaacaagtttctcaaaaatgggatcccatatatgaatgaagagcaggagaagaaa
attaaacacaacatcctgactggcaactggagagttcgcaggttctcgtggttttctcca
gcatcccactttcatgtgcccgttttcagttctctggacaaagaccaaatcaaggtggtg
atcgatgaggtgacacggtggctggactcggcggaggagggcgactggatgactcttcct
ggtattgctggcttccaggcctttgaggtccagctggtactgaggcaggccctccccgac
atctggacggtcctgagagaccaggggataatagtgaaaaaagtgaataaacaacatcgc
tggtatcttgagaacacctcctgtgatcgagcgagctgttggaaggagaagattcttctc
tctgcccggggtttttcagtgtttttccagatgctggtgaaagcccagaagcccctagtg
ggccacaacatgatgatggacctgctgcaccttcatgagaagttcttccggccgctccca
gaaagctatgatcaatttaagctgaatatccacaacctgtttcctgttctcattgacacc
aagaatgtgaccagggatatctggaaggaactgaatttcccaagggtttcaaatctttca
gaagtttatgaagtcctaaacagcgacttgaatcctactaaaaattccgggccagaggtc
attcacgcaagcaagtgtgagaaatacgttgagaccaagtacccccacgaggctgcgtac
gatgccttcctctgtggatcagttcttctgaaagtggcacacttgctcctgtggagagta
cgtggtactggccccatgcctgagccctccttccctctatacctcgacgtgctggctccc
tacatgaaccaggtgaatcttatccgagccggggtccctaagattaatttttcgggtcca
gattgccccagtatccgacctcccatcctcctccttcatgtccggaggtggcctgaggtc
agcgagcagcaggtctattgggagtttcagaatctctgcaagttcgatgtgcggcgactc
tcgaggagccagttcctgctcttgaccaataagtttaaggatgctcggagcatcctgaag
gagtacaggggccaccccaccctgcaggtctccctgtaccggtactggaggcactccccg
aacatcaactgcctgttacaggtctgtggcgtggtcaccacctgggccctcctggcgctt
ctcctcggaagacctgacctctga
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