Ailuropoda melanoleuca (giant panda): 100478914
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Entry
100478914 CDS
T01329
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04151
PI3K-Akt signaling pathway
aml04510
Focal adhesion
aml04512
ECM-receptor interaction
aml04820
Cytoskeleton in muscle cells
aml04926
Relaxin signaling pathway
aml04933
AGE-RAGE signaling pathway in diabetic complications
aml04974
Protein digestion and absorption
aml05146
Amoebiasis
aml05165
Human papillomavirus infection
aml05200
Pathways in cancer
aml05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100478914 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100478914 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100478914 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100478914 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100478914 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
100478914 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100478914 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
100478914 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100478914 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
100478914 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100478914 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aml04147
]
100478914 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
aml00536
]
100478914 (COL4A4)
Exosome [BR:
aml04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100478914 (COL4A4)
Glycosaminoglycan binding proteins [BR:
aml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100478914 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100478914
NCBI-ProteinID:
XP_034511170
Ensembl:
ENSAMEG00000004084
LinkDB
All DBs
Position
2:complement(187859076..187989265)
Genome browser
AA seq
1688 aa
AA seq
DB search
MHMASVRCSLMWIKPFTAHPWSLILILFSLQHVYGSGKKFVGPCGGRDCSVCQCFPEKGS
RGQPGPLGPQGPIGPLGLPGPVGIPGEKGMRGDSGPPGAAGDKGDKGPTGVPGFPGLDGI
PGHPGPPGSRGKPGMHGYNGSRGDPGFPGERGVPGPGGPPGLPGESGEKGNSVFILGAIK
GIQGDRGNPGPPGLPGLRGTRGPAGPMGHPGEPGLAGAPGHPGRPGLKGNPGVGVKGQMG
DPGEVGQQGSPGPTLLVQPPDSCLYKGEKGIKGMPGMIGPPGPPGPKGEPGIGAKGEKGI
PGFSGPRGDPGSYGSPGFPGLKGKPGLFGEPGSFGFLGPKGDPGDRGYPGPPGVLVTPSL
PLKGPPGDPGRPGRYGETGSVGPPGPPGPSGPPGEACAGMMGPPGPRGFPGHPGFPGAAG
IPGRADSSPGKPGNPGPPGLPGAQGLQGPPGSDVIYCSVGHPGPQGIKGKVGPPGRRGSK
GEKGNAGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGSPGPPGK
HGTSGPPGSKGEKGDMVVSRVKGHKGERGPDGLPGFPGQQGQHGRDGLPGRKGDPGPPGD
HEDALPGDEGSPGPPGPPGRAGPRGQPGLGFPGPPGERGPPGAPGRPGERGLEGLKGQKG
DTISCNVTYPGRPGPPGFDGPPGPKGFPGPPGAPGLRCLDGQKGRPGRPGISEIPGPPGF
RGDLGDPGFGGEKGSSLLGPPGFPGSRGANGQKGVVGDTAYGQPGAPGRRGLSGVPGSKG
HRGDPGRPGFAGPAGRPGLPGLKGPRGREGSAGFPGIPGPPGHSCEGGTPGTPGQPGLPG
APGRPGAPGWKGQRGDVGPPGPAGMKGLPGVPGRPGTDGPLGLPGIPGLSGDDGQPGLPG
PKGSQGLPGFPGFPGERGKPGPEGRTGRKGDPGEDGRPGFLGDQGVKGAKGERGPPGDEG
EMAIISQKGKTGEPGPPGDGGFPGEEGAKGDPGIQGRRGEPGRHGAPGFHRGEPGRTGQP
GLPGPPGLPGSPGLRGIIGFPGFPGDQGELGSPGSPGLSGVDGMRGPKGNRGDPASQFGS
PGPKGEPGSPGCPGHLGVPGEQGFPGVQGPTGPPGRPGLPGASGPPGCPGNQGVPGLQGP
PGETGDLGSRGMMGDPGTPGLPGIKGSSGSPGLNGLHGLKGQKGAKGASGLHEVGPPGPV
GIPGLKGETGDPGSPGISPPGLSGGRGPPGPPGRPGSPGPAGAAGRAPEGDIPDPGPPGD
QGPPGPDGPRGAPGPPGPPGSVDLLKGEPGDCGLPGPPGPPGPPGPPGHKGFPGCDGKDG
QKGPIGFPGLQGPQGLPGPPGEKGLPGIPGRKGHPGLPGSRGEPGPPADVESCPRIPGLP
GVPGPRGPEGAMGVPGARGPPGPGCKGDSGPDGRRGEDGLPGPPGPPGSKGDAGEAGCPG
APGPPGPTGDPGPEGFGPGHLSGFLLVLHSQTDGEPACPAGMPRLWTGYSLLYLEGQEKA
HNQDLGLAGSCLPMFSTLPFAYCNIHQVCHYGRRNDRSYWLASAAPLPVTPLAEEAIRPY
ISRCAVCEAPAPAVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSC
LEDFRAAPFLECQGRQGTCHFFANEYSFWLTTVSPDLQFSSAPSPDTLKESQAQRQRTSR
CRVCMKSS
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgcacatggcgtccgtaaggtgctcactgatgtggatcaagcccttcactgcacatccc
tggtcacttatacttatccttttttctctacaacatgtatatgggagtggaaagaagttt
gtgggtccttgcggaggaagagattgctcagtgtgccagtgttttcctgaaaaagggtct
cggggtcagccaggacctctggggccacagggtcctattggacccctgggactgcctgga
cctgttggcattccaggagagaaagggatgagaggtgacagtggtcctcctggggcagca
ggtgacaaaggtgataagggtccaactggtgttcctggatttccaggtttggatggcata
cctgggcatccagggcctcctggatccagaggcaagcctggcatgcatggctataatggt
tcacgaggtgatccagggtttccaggagaaagaggagttcctggcccaggaggcccccca
ggccttcctggggaaagtggagaaaaaggaaactcagtgttcattttaggtgccattaaa
ggtattcagggcgacagagggaacccaggacctcccggcttgccgggattgagggggaca
agaggaccagcgggccctatgggacatccaggagagcccgggttagctggtgctccgggc
catcctgggagaccaggcttgaagggcaatcctggcgtgggagtaaaggggcaaatggga
gacccgggtgaagttggccagcaaggttccccggggcccaccttattggtacagccgcct
gactcttgtttgtataaaggagaaaagggcataaaaggaatgcctggtatgattggacct
ccaggaccaccaggacccaagggagaacctggaattggggcaaaaggagagaagggtatt
cctgggttctcaggacctcggggtgatcctggttcctatggatctccaggttttccagga
ttaaaggggaaaccaggactgtttggagaacctggatcatttggatttcttggcccaaag
ggggatcccggagaccgcgggtacccaggaccaccgggggttttggtaactccatctctt
ccactcaaaggccctccaggggatccggggcgccctggccgctatggagaaacgggatct
gttggaccacctggtccccccggtccctccggtccaccaggggaagcctgtgcaggcatg
atgggaccccctgggccaagagggtttcctggtcatccgggatttccaggggcagctggt
atccctgggagagctgattccagtccaggaaagccagggaacccaggaccgcctgggttg
cctggagcacaagggctgcagggacctccgggatcagacgttatatattgtagtgttggg
caccctggaccacaaggaataaaaggcaaagtgggtcctccaggaagaagaggctcaaaa
ggagaaaaaggaaacgcggggctctgtgcctgtgagcctggtcccatgggcccaccaggc
cctccgggacttcctgggaggcagggtagtaagggagacttggggctccctgggtggctt
ggagagaaaggtcacccaggccctcctggtgctgaaggatctccaggaccaccaggaaaa
catggtacctcaggaccacctggcagcaaaggagaaaagggtgacatggttgtatcaaga
gtgaaagggcacaaaggagaaagaggtcctgatgggctcccgggatttccagggcaacag
ggacaacatggtcgagatggacttcctggaagaaaaggggatccaggccccccaggggat
catgaagacgcactcccaggtgatgaagggtctcctggaccgccgggccccccgggcaga
gcaggacctaggggacaaccaggtctgggatttcctggcccaccaggcgagagagggcca
ccaggagctccaggccgccctggcgagaggggcctcgagggcttgaagggtcagaaaggc
gatacaatttcttgtaatgtcacctaccctgggaggccagggccccccgggtttgatggg
cctccaggaccaaagggatttccaggtcctccgggtgctccggggttgaggtgtttggat
gggcagaaaggtcggcctggcagaccaggaatatcagaaatcccgggtccacctggcttt
cgtggtgacttgggcgatccgggttttggaggtgaaaaggggtcttcccttcttgggccc
ccaggctttcctggttctcgtggagcaaatggtcagaaaggagtcgtgggagacactgcc
tatggccaaccaggtgccccaggaaggagaggtctttcaggagtgccagggtcaaaagga
cacagaggtgacccaggacgtccaggctttgcagggccagcaggcaggccgggactccca
ggtctcaaaggacccagaggcagagagggaagtgctgggtttccaggaatcccaggtccg
cctggtcattcctgtgaaggaggcaccccagggacaccagggcaaccgggactccccggg
gctccgggccgtccaggtgccccaggttggaaaggacagagaggggatgtggggcctcct
ggtcccgctggaatgaagggcctccctggagtcccgggacggccagggacagatggtccc
ctaggactcccaggcatcccaggcctctcaggggatgatggacagcctggtcttccaggc
ccaaagggatcccaggggctgcctggcttccccggttttccaggggaaagaggaaagcct
ggccctgagggacgcactggcaggaagggggacccgggagaggatggtcggcctggcttc
ctcggagaccagggggtgaaaggtgccaaaggagagagaggacccccaggagatgaagga
gagatggctatcatttcccaaaaggggaaaaccggggaacccggacctccgggagatggt
ggattcccaggagaagaaggtgctaaaggcgatcctgggatacaggggaggagaggagag
ccaggaagacacggagcacccggattccacagaggggagcctggtagaaccgggcagcca
gggcttcctggacccccaggcctcccaggctcacctgggctgagaggaattattggtttt
ccgggatttccaggtgaccagggtgagctgggttctccagggtcccccggactttcagga
gttgatggaatgagaggacctaaaggaaacagaggtgaccctgctagtcagttcggctca
cctggtccaaagggtgaaccaggtagccctggatgtccaggacatcttggagtacccggg
gagcagggctttcccggtgttcaagggcccacaggaccacccggaaggccaggcctacct
ggtgcctctggaccaccaggatgtccaggtaatcaaggggtgcctgggctgcagggacct
ccaggagaaacaggggatctcgggtcaagaggcatgatgggagatccagggacaccaggt
cttccgggaataaaaggttcctctgggtcgcctggtctgaacggcttacatggtttaaag
ggtcagaagggagccaaaggcgcttcaggtctgcacgaagtgggcccacctggtccagtg
ggcatacctgggctgaaaggagagacgggagaccctgggagcccgggaatttctcccccc
ggcctttctggaggaagaggtccccccggccctccagggagacctggatcacctggtcct
gcaggtgccgcaggaagagctcctgaaggggacattcctgacccaggtccacccggagat
cagggacctcctggccccgatggtccaagaggagcacctgggcccccaggcccccctggg
agtgttgaccttctgaaaggggaaccaggagactgtggtctgccggggcctccaggtccc
ccgggcccacccgggcctccaggacacaaaggcttcccaggatgtgatggaaaagatggc
cagaaaggaccaataggattcccagggctgcaggggccacagggacttcctggcccccct
ggggagaagggtttacctggcattccaggcagaaaggggcaccctggtcttccaggttcc
agaggtgagccagggccgcccgccgacgtggagtcctgtccccgaatccccgggcttccc
ggggtaccaggcccaagaggaccagaaggagccatgggggtccctggagcgagagggccc
ccaggaccagggtgcaaaggagattctgggccggatggcaggaggggcgaggatggcctc
ccagggcctcctgggcctcctggaagcaaaggggatgcgggagaagccggatgccctgga
gcaccaggccctcctgggcccactggggaccccgggcccgaagggtttgggcctggccac
ctcagtggcttcctcctggttctccacagtcagacggacggagagcccgcctgtcccgcg
ggcatgcccaggctctggacgggctacagtctcttatacctggaaggacaggagaaggca
cacaatcaggacctcggtctggcagggtcttgccttcccatgtttagcacgctgcccttc
gcctactgcaacatccaccaagtgtgccactacggccgcaggaacgaccggtcctactgg
ctggccagcgccgcaccgctgcccgtgacgccgctcgccgaggaggccatccgcccgtac
atcagccgctgcgccgtgtgcgaggccccggcccccgccgtggcgctgcacagccaggac
cagtccatccccccgtgcccacgcacctggaggagcctctggatcgggtactcgttcctg
atgcacacaggggctggggaccaaggaggagggcaggccctcatgtcccctggcagctgt
ctggaagacttccgagccgcgccgttcctcgaatgccaaggccggcagggaacttgccac
ttttttgcgaacgagtatagcttctggctgacgacagtgagccctgacttgcagttttcc
tcggcgccctccccggacaccttgaaagagagccaggcccagcgccagaggaccagcagg
tgccgggtgtgcatgaagtccagctag
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integrated database retrieval system
