Ailuropoda melanoleuca (giant panda): 100479044
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Entry
100479044 CDS
T01329
Symbol
SIX4
Name
(RefSeq) LOW QUALITY PROTEIN: homeobox protein SIX4
KO
K15615
homeobox protein SIX4
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml05202
Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
100479044 (SIX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aml03000
]
100479044 (SIX4)
Transcription factors [BR:
aml03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
100479044 (SIX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
NTP_transf_3
Motif
Other DBs
NCBI-GeneID:
100479044
NCBI-ProteinID:
XP_034498114
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Position
14:complement(3576725..3585497)
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AA seq
786 aa
AA seq
DB search
MSSSSPTGQIASAADIKQENGMESASEGQEAPREVAGGAAAGLSPPAPAPFPLEPGDATA
AAARVSGEEGAVAAAAADQVQLHSELLGRHHHAAAAAAAAVAAAAAQTPLAFSPDHVACV
CEALQQGGNLDRLARFLWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFES
ANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRN
ALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPST
EDESSKGHEDLSPHPLSGSSDSVTNLSLSSHMEPVYMQQIGNAKISLSSSGVLLNGSLVP
ASTSPVFLNGNSFIQGPNGVILNGLNVGNTQTVSLNPPKMASNIVSNGISMSDILGSASQ
DVKEFKVLQSSSANSAATTSYSSSAPVSFPGLIPSTEVKREGIQTMASQDGGSVVTFTTP
VQINQYGIVQIPNSGTNSQFINGSIGFSPLQLPSVSVAASQGNISVNSSTSDGSTFTSES
TTVQQGKVFLSSLAPSAVVYTVPNSGQTIGSVKQEGLERSLVFSQLMPVNQNAQINANLS
SENISGSGLHPLASSLVNVSPTHNFSLTPPTLLNPTELNPDIADSQPMSAPVASKSTVTS
VSNTNYATLQNCSLITGQDLLSVPMTQAALGEIVPTAEDQVGHPSPAVHQDFVREHRLVL
QSVANIKENFLTNSESKATSNLMMLDSKSKYVLEGMVDTVCEDLETDKKELAKLQTVQLD
EDMQDL
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcctcccccaccgggcagattgcaagtgcggcggacatcaagcaggagaat
gggatggaaagcgcctcggaagggcaggaggcgccccgagaagtggcggggggcgcggcg
gcggggctgagccccccggctccagcccctttccccctggagccgggggacgccacggcc
gccgccgcaagggtgagcggagaggaaggggcagtggcggcagcggcggcggatcaggta
caactccactcggaacttctgggcaggcaccaccacgccgcggccgcggccgcggccgcc
gtcgccgccgccgccgcgcagaccccgctggccttctcgcccgaccatgtcgcctgcgtg
tgcgaggcgctgcagcaggggggcaacctggaccgcctggcccggttcctgtggtccctg
ccccagagcgacctgctacgtggcaacgagagcctgctgaaggcgcgggcgctggtggcc
ttccaccagggcatctaccccgagctctacagcatcctcgagagccacagcttcgagtcg
gccaaccacccgctgctgcagcagctctggtacaaggcgcgctacaccgaggccgagcga
gcccgcggccggccactgggcgccgtggacaagtaccggctgcgcaggaaattccccctg
ccccgcaccatctgggacggcgaggagacggtgtattgtttcaaggagaagtcgcgcaac
gcgctcaaggagctctacaagcagaatcgctacccttcgcccgccgagaagcggcacctg
gccaagatcaccggcctctccctcacccaggtcagcaactggtttaagaaccgccggcag
cgcgatcggaacccctcagagacccagtccaaaagtgagtcagatggcaatcccagcact
gaagatgaatccagcaagggccatgaggacttgtctcctcatccactctccggttcatcg
gatagtgtcaccaacctcagcctttccagtcacatggagcccgtatatatgcaacaaatt
ggaaatgctaagatctcattaagctcttctggagttttgttgaatggaagcttggtgcct
gcaagtacttcacctgtctttcttaatggtaattctttcattcagggacccaatggagtc
atccttaatggattaaatgtgggaaatacacagacagtgtcattgaacccaccaaaaatg
gcatcaaacattgtgagcaatggtatatccatgagtgacatactggggtctgcctcccag
gatgtgaaggaattcaaagtcctccagagttcttcagctaactcggcagccaccacttcc
tacagctccagtgcccctgtgtcattcccagggctgatacccagcactgaggtcaaaaga
gaaggcattcaaacaatggcttcccaggatggaggctctgtggtgacttttactacacca
gtgcaaattaaccagtatggcattgtccagatccccaattccggaacaaacagccagttc
attaatgggagcattggattctctccactgcagctgccttctgtttctgtagcagcttca
caaggtaatatttcagtaaattcaagcacttcagatgggagcacatttacaagtgagtcc
accacagtccagcaaggaaaggtttttttgagctcccttgctcccagtgcagtggtatac
actgttcctaattcaggccagactataggatctgttaaacaggagggcttggagaggagc
ctggtattttctcagttgatgcctgtcaatcagaatgcacaaataaatgcaaacctgtct
tctgaaaatatctcggggagtggtctccatccactggcctcctcattagttaatgtatcc
ccaactcacaatttttccctgactccccctaccttactaaatcccaccgagttaaaccct
gacattgctgatagccagccaatgtctgcacctgtggcaagcaaatctactgtgacatct
gtcagcaacactaactatgcaactcttcagaactgttcccttattactggtcaagatctc
ttgtcagtccccatgactcaggctgcccttggggaaattgttcctacagctgaagaccag
gtgggtcacccttccccagcagtacaccaggattttgtcagagaacatcgtttggttctg
cagtcagtagctaacataaaagagaatttcttaacaaattctgagagcaaagccacaagc
aacttaatgatgctggactcaaaatccaagtatgtcctagagggcatggtcgacactgtc
tgtgaagacctggaaacagacaaaaaagagcttgccaagctccaaactgtccaattggat
gaagatatgcaagacttataa
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