Ailuropoda melanoleuca (giant panda): 100479213
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Entry
100479213 CDS
T01329
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04140
Autophagy - animal
aml04142
Lysosome biogenesis
aml04145
Phagocytosis
aml04148
Efferocytosis
aml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
100479213 (VPS39)
04142 Lysosome biogenesis
100479213 (VPS39)
04140 Autophagy - animal
100479213 (VPS39)
04148 Efferocytosis
100479213 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100479213 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aml04131
]
100479213 (VPS39)
Membrane trafficking [BR:
aml04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100479213 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
DUF4145
Beta-prop_WDR36-Utp21_1st
KCTD11_21_C
Lgl_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
100479213
NCBI-ProteinID:
XP_002913247
Ensembl:
ENSAMEG00000016145
UniProt:
G1MCL7
LinkDB
All DBs
Position
5
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEQVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGAENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLMFLEIS
GYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAEEYCHKHYDQNR
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKALNLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagcaagtgccgatcctagaaaagctgcctctgcagatcgactgt
ttggctgcctgggaggaatggctgcttgttggcaccaaacaaggacatcttcttctctat
aggatccggaaggatgctggttgcaacaggtttgaagtgacactagagaaatccaataaa
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttacgtccatgacctattgacatttcaacaaatcactacggtt
tcaaaggcaaagggagcctcactgttcacatgtgacctccagcacacagagactggtgag
gaggtgttgcggatgtgcgtggccgtgaaaaagaagctgcagctctacttctggaaggac
agggaatttcatgaattgcagggggactttagtgtaccagatgtgcccaagtccatggca
tggtgcgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaagggtccatcaaagagctctttccaacaggaaaacagctggagccgttagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaaatgtgccttgaactggacagacataccagtggccatggag
caccagcctccctacatcattgcagttctgcctcgatatgtggagatccgaacatttgaa
ccaaggcttctggtccagagcattgaactgcaaaggccccgcttcattacctcaggagga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctacagctcgca
gaaatgaaagatgattccgacagcgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctgtacccagacctgctgcccacggactac
aggaagcagctgcagtaccctaacccgctgcctgtgctctcgggggctgaactggagaag
gcacacttagctctgattgactacctgacacagaaacgaagccagttggtaaagaagctg
aatgactctgatcaccagtctagcacctccccgcttatggaaggcactcccaccatcaaa
tccaagaagaagctgttgcagatcattgacaccacgctgctcaagtgctacctccatacg
aacgtggccctggtggcccctctgctgcgcctggagaacaaccactgccacatcgaggag
agcgagcatgtactgaagaaggcgcacaagtacagtgagctgatcatcctgtatgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaattcg
cctctgaaaggccacgagaggacagtgcagtatctgcagcatttgggcgcagaaaacctg
catttgattttttcctactcggtgtgggtgctgcgagacttcccagaggatggcctaaag
atctttaccgaagacctcccggaggtggaatctctgccacgggaccgagtgctcggcttc
ttagtggagaattttaagggcctggctattccttatctggaacatgtcatccacgtttgg
gaggaaacgggctctcggttccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaaactccagtccctgctgga
gaggaagagggtgagctgggagaataccgacggaagctccttatgttcttggaaatttct
ggctactatgatccaggccggcttatctgtgactttccttttgatggcctcttagaagag
cgcgcactgctgctgggccgcatgggaaagcacgagcaagctctcttcatctacgtgcac
atcctgaaggacacaaagatggccgaggagtactgccacaagcattacgaccaaaacaga
gatggcaacaaagatgtgtatctgtccctgctccggatgtatctgtcgccccccagtgtt
cactgcctgggaccaatcaagctggaactgctggagccacaagccaacctccaggctgcc
ctgcaggtcctcgagctgcaccacagcaagctggacaccaccaaggccctcaaccttctc
ccagcaaacactcagattaacgatatacgcatctttctggaaaaggtcttggaagaaaat
gcacaaaaaaaacggttcaatcaagtgctcaagaaccttctccatgcagaatttctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacggaggagaaggtc
tgcatggtgtgtaagaagaagattggaaacagtgcatttgcaagataccccaatggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagctgacacctga
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