KEGG   Ailuropoda melanoleuca (giant panda): 100479652
Entry
100479652         CDS       T01329                                 
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100479652 (EXOSC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aml03019]
    100479652 (EXOSC1)
Messenger RNA biogenesis [BR:aml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     100479652 (EXOSC1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     100479652 (EXOSC1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 100479652
NCBI-ProteinID: XP_002917030
Ensembl: ENSAMEG00000000129
LinkDB
Position
6:complement(99277394..99284196)
AA seq 207 aa
MRSRLRFPPVAVMAPPVRYCIPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLTKSSENG
ALPVISVMRETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDV
RATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPIS
WCEMQCPKTHTKEFRKVARVQPEFLQT
NT seq 624 nt   +upstreamnt  +downstreamnt
atgagaagtcgacttcgtttccctccagtggcagtcatggcgccacccgtgaggtactgc
attcctggcgaacgtctgtgtaacttggaggagggcagcccgggcagcggcacttacacc
cgacacggctacatcttttcgtcgcttgctggctgcctgacgaagagcagcgagaacggc
gcgcttcctgtcatttctgtgatgagagaaacagagtcccaattactaccagatgtgggg
gctatcgtaacctgtaaggtctccagcatcaattcgcgctttgccaaagtgcacatccta
tatgtagggtccacaccacttaagaattctttccgaggaactatccgcaaggaagatgtc
cgagctactgaaaaagacaaggttgagatttataagagtttccgcccaggtgacattgtc
ttggccaaagtgatctccctgggtgatgcacagtccaactacctcctgaccactgctgag
aacgagctcggggtggtggtggcccacagtgaatcaggtgtccagatggttcccattagc
tggtgtgagatgcagtgccctaagacccacactaaagaattccggaaagtggcccgagta
cagcctgaattcttacagacctaa

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