Ailuropoda melanoleuca (giant panda): 100479688
Help
Entry
100479688 CDS
T01329
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04151
PI3K-Akt signaling pathway
aml04510
Focal adhesion
aml04512
ECM-receptor interaction
aml04820
Cytoskeleton in muscle cells
aml04926
Relaxin signaling pathway
aml04933
AGE-RAGE signaling pathway in diabetic complications
aml04974
Protein digestion and absorption
aml05146
Amoebiasis
aml05165
Human papillomavirus infection
aml05200
Pathways in cancer
aml05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100479688 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100479688 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100479688 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100479688 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100479688 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
100479688 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100479688 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
100479688 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100479688 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
100479688 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100479688 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aml04147
]
100479688 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
aml00536
]
100479688 (COL4A6)
Exosome [BR:
aml04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100479688 (COL4A6)
Glycosaminoglycan binding proteins [BR:
aml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100479688 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100479688
NCBI-ProteinID:
XP_034505897
Ensembl:
ENSAMEG00000012108
LinkDB
All DBs
Position
X:complement(74848109..75119464)
Genome browser
AA seq
1706 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELAGAGEKKSYGKPCGGQDCRGGCKCFPEKGARGRPGPIGIQGP
TGPQGFAGPSGLAGLKGERGSPGPLGPYGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGP
PGLDGCNGTQGAVGYRGPDGYPGLLGPPGLPGQKGSKGEPVLAQGIFKGMKGEPGLPGLD
GVNGPPGAPGSPGAVGPMGPPGLQGPPGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGLPGFPGISGPPGPPGFGTAGEKGEKGIPGLPGPRG
PMGLEGLQGPPGSQGKKGSSGFPGLNGFPGIKGEQGAIGLPGPDVFIDTDGAVISGYPGD
PGMPGLPGLKGDEGIQGLPGPSGVPGLPALPGAPGALGPQGVPGLKGDQGNPGRTTVGTA
GSPGRDGLPGLPGLPGPPGPAFETGTLQNAEPGFPGLRGERGPKGNPGLKGMKGDSGFCA
CDGGVPNTGPPGEPGLPGPPGLIGLPGLKGTRGDPGSGGAQGPSGAPGLFGPPGHAGPKG
EKGEQTLSSGSGVPGEQGDPGPQGLPGETGAPGKDGIPGLPGLPGLPGDGGQGFPGEKGL
PGLPGEKGHSGPTGPPGIGLPGSPGPRGFPGDQGINGLPGQQGLPGLPGDCCCRESIGKG
DLVTEGGITLPCIIPGSYGPSGLPGAPGFPGPKGAHGLPGTPGQPGLRGNKGEPGSPGSV
HLPELPGFPGPRGEKGLPGFPGLPGKDGLPGKLGSPGLPGSKGAPGDIFGAENGAPGEQG
LQGLPGDRGVPGDSGLPGPKGLLGKSGLLGPKGEQGSPGTPGHMGQPGSPGPDGLFGVKG
KPGLPGAPGFPGPSGHPGKKGVRGEAGAPSSAGKRGLPGLKGLPGSPGLVGFLGSSGLPG
NTGLPGLPGPKGEKGSFGLAGFPGMPGLPGIPGASGLKGISGSTGRVGPFGQAGSAGEKG
DRGDPGPAGIPSPRPPMLNLRFKGDKGSRGSAGLDGFPGPRGDKGQAGPPGPPGLPGAPG
FPSTIKGLIGRAGLPGSTGQRGLPGLKGSPGITGFPGIPGESGSQGLNGAPGLPGTSGLP
GSKGDQGQTLGISGSPGPKGQPGESGFKGVKGTDGLVGDVGFPGSKGEDGNVGISGDVGF
PGSPGLPGIAGMRGNPGFPGSPGHPGATGPLGSSGLMGTKGFPGLPGLHGLNGLPGTKGT
HGTPGPSITGVPGPAGLPGPKGERGSPGSGLGAPGKSGMKGQKGGRGFPGLQGPAGLPGA
PGLSLPSVIVGQPGDPGRPGLDGERGRPGSPGPPGPPGPSSDQGDPGDPGFPGVPGPQGP
KGDQGIPGFSGFPGELGLKGVRGEPGFMGIPGKVGPPGDPGLPGMKGKAGPRGFAGPRGA
PGQTPIAEAVQVPPGPMGLPGIDGIPGLTGDLGVQGPVGFQGSKGLPGIPGKDGLNGLPG
PPGALGDPGLPGLQGPPGFEGAPGKKGPFGRAGAPGQSVRVGYTLVKHSQSEQVPVCPIG
MSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNVDEVCHYAGRNDKSYWL
STTAPIPMMPVGQAQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLM
HTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGE
EPVSETLKAGQLHTRVSRCQVCMKSL
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggctgctcctggttacgttgtgcctgaccgaggaactggcagga
gccggcgagaagaagtcctatggaaagccatgtggaggccaagactgcaggggaggctgt
aaatgctttcctgagaaaggagcgagagggcgaccgggaccaatcggaattcaaggtcca
acgggtcctcaaggatttgccggccctagtggtttagccgggttgaaaggagaaaggggc
tccccaggccccctgggaccatatggaccaaaaggagataagggtcccatgggagttcct
ggctttctcggcatcaatgggattccgggccaccccggacagccagggcccaggggccca
cctggcctggatggctgtaatggcactcaaggagctgttggatatcggggccctgatggc
tatcctgggcttcttggaccacccgggcttcctggtcagaaaggctctaaaggtgaacct
gtccttgcccaaggtattttcaaaggaatgaagggggagcctggactgcctggactggat
ggagtcaatggtccaccaggagcacctgggtccccaggagcggtaggacccatgggacca
ccaggattgcagggtcctccaggtccccccggcttccctggtcctgatgggaatatgggg
ttaggtttccaaggagagaaaggagtcaagggggatgttggcctcccaggccctgcagga
cccccaccctctaccggggagctggaatttatgggatttcccaaagggaagaaaggatcc
aagggtgaaccagggcttccgggtttcccaggaataagtggccctccaggtcccccggga
ttcggaactgctggagaaaagggagaaaagggaatccctggtttgccaggacctaggggt
cccatgggtttagaaggactccaaggccctccagggagtcagggcaagaaggggtcctca
ggtttccctgggcttaatggattcccaggaattaagggtgaacagggtgccattggcctg
ccgggcccagatgttttcattgatacagacggtgctgtgatctcaggttatcctggagac
cccggtatgccaggcctcccaggacttaaaggagatgaaggcatccagggcctgcctggc
ccttctggcgtccccggcttgccggctttaccaggtgccccaggtgccctagggccccaa
ggagttccaggcctgaagggggaccaaggaaacccaggccgcaccacagttgggacagct
ggctcccctggcagagacggtttgccaggcctgcccggcctcccggggccccccggtcca
gcatttgagactggaaccctacagaacgcagagccaggcttccctggtctccgaggagaa
cgaggtccaaaaggaaacccaggcctcaaaggaatgaaaggggactcgggcttttgtgct
tgtgacggtggtgtccctaacactggaccacctggggagccaggcctgcctgggccaccc
ggcctcataggccttccaggccttaaaggaaccagaggagatccaggctctgggggtgca
cagggcccatcaggggctccaggtttgtttgggcctccgggtcacgcgggccccaaagga
gagaaaggggaacagactctcagttcaggatcaggggtgccgggggagcagggtgatcct
ggcccccaggggctccctggggagaccggagccccaggcaaggatggaatacccggctta
ccaggtctgccaggcctcccaggtgacggtggacagggcttcccaggtgaaaaggggtta
ccaggacttcctggtgaaaagggccacagtggtccaactggccccccaggaattgggctg
ccaggatctcctggacctcgtgggtttcctggagatcaaggaatcaatggattaccaggg
caacaaggcctccctgggcttcctggtgactgctgctgcagggagagcattggtaaagga
gacttagtcacagagggagggatcaccttgccgtgtataattcctggctcctatggtcca
tcaggcttaccaggagctcccggattcccaggccctaaaggggcccatggcctccctgga
accccaggccagcccggactgcgtgggaataaaggagagcctggaagtccgggatcggtt
caccttcctgaattgccaggatttcctggacctcgtggagagaagggcttgcctgggttt
cctgggctccctggaaaagatggcttgcctgggaaactgggcagtccaggtttacccggt
tccaagggagcccctggtgacatctttggtgctgagaatggtgctccgggggagcaaggc
ctgcagggattgccaggggacagaggagttcctggagactctggccttccagggcccaag
ggtttgcttgggaagtcgggcctgctaggtcccaaaggtgaacagggcagccctggcaca
ccgggccacatgggacagccagggtccccagggcctgatggtctattcggcgtcaagggc
aaacccgggctcccgggcgcaccaggctttccaggcccttcaggacatcctggaaagaaa
ggtgtaagaggtgaggcaggtgccccttcatcagctggaaagagaggcctgccggggctg
aaaggccttccgggatctccagggctggttggcttcttggggagctcaggcttgccaggc
aacactgggttgccaggcctgccaggtccaaagggtgagaaggggtcttttgggctggca
ggctttccggggatgcctggtctcccaggtattcctggcgcaagtggattaaagggaatt
tctgggtcaaccggaagagtgggaccatttggacaggccggtagcgctggtgagaaagga
gacagaggcgaccccgggccagctggaatacctagcccaagacctcccatgctgaacctc
cggttcaaaggggacaaaggatccagaggctcagctggattggacggatttcctgggccc
agaggtgacaaaggacaggctggccccccggggccaccaggcttgcctggagctcctggc
ttccccagtaccatcaagggactcattggcagagctggcctccctggctccactggacaa
cggggcttacctggcctgaaggggtcccctggaattacaggcttcccaggaataccaggg
gaaagtggttcacagggtctcaatggagcgcctggactcccaggaacatctggtctccca
ggttcaaagggagatcaaggtcagacacttggaatttctggtagcccaggacccaaggga
caacctggggagtctggttttaaaggcgtgaaaggaacagatgggcttgttggtgatgtg
ggtttcccaggaagcaaaggtgaagatgggaatgttggtatttctggagatgttggcttt
cctggctccccaggactccccgggattgcaggcatgagaggaaatccagggtttccgggt
tctccaggccatccaggggcaactgggcccctgggatcatctggcctaatgggaaccaaa
ggtttccctggacttcctggtttacatggactgaatgggcttccaggaaccaaggggacc
catggaactccaggacctagtataaccggcgtgcctgggccagctggcctgcctggtccc
aaaggggaaagaggttctccaggaagtggccttggagccccagggaagtcaggcatgaag
ggacaaaaaggtggccgaggtttcccaggtctccagggccctgctggtctgcccggtgcc
ccaggcctctccttgccctcagtcatagtgggacagcctggcgaccctgggcgaccaggc
ctagatggagagcgaggccgcccaggctcccccgggcccccagggccccctgggccatcc
tccgatcaaggtgaccctggagaccctggcttccctggagttcctggccctcaagggccc
aagggagaccaaggaattccaggtttctccggcttccctggagagctaggactgaaaggt
gtgagaggtgagcctggcttcatggggattccaggcaaggttgggccacctggagaccca
ggacttcccggaatgaaggggaaggcagggcccagaggctttgccggaccccgaggtgct
cctggacaaacaccaattgcagaagctgtccaggttcctcctggacccatgggtctaccg
ggcatcgatggcatccctggcctcacgggggaccttggggttcaaggccctgtgggcttc
caaggctccaaaggtttaccgggcatccctggcaaagatggtctcaacgggctccccggc
ccgcctggggctctcggtgatcctggtctccctggactgcaaggccctccaggatttgaa
ggagctccagggaagaagggtcccttcgggagggctggagcacccgggcagagcgtgaga
gtggggtacaccttggtgaagcacagccagtcggaacaggtgcccgtgtgccccatcggg
atgagccagctgtgggtgggttacagcttgctcttcgtggaggggcaggagaaagcccac
aaccaggacctgggctttgctggctcctgcctgccccgcttcagcaccatgcccttcatc
tactgcaacgtcgacgaagtgtgccactatgccgggcgcaacgataaatcctactggctc
tccaccaccgcccccattcccatgatgcccgtcggccaggcccagatcccccagtacatc
agccgctgttccgtgtgcgaggcaccctcgcaggccattgccgtgcacagccaggacatc
accatccctcagtgccccctgggctggcgcagcctctggatcgggtactccttcctcatg
cacactgcagcgggcgcagagggcggcggccagtcgctggtctcccccggctcctgcctg
gaggatttccgcgccacgcccttcatcgagtgcagcggggcccggggcacctgccactac
ttcgccaacaagtacagtttctggctgaccacggtggaagagaggcagcagtttggggag
gaaccggtatccgaaacgctcaaggccgggcagctccacacccgggtcagccgctgccag
gtgtgtatgaaaagcctgtag
DBGET
integrated database retrieval system
