Ailuropoda melanoleuca (giant panda): 100480380
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Entry
100480380 CDS
T01329
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04064
NF-kappa B signaling pathway
aml04514
Cell adhesion molecules
aml04668
TNF signaling pathway
aml04670
Leukocyte transendothelial migration
aml04933
AGE-RAGE signaling pathway in diabetic complications
aml05143
African trypanosomiasis
aml05144
Malaria
aml05417
Lipid and atherosclerosis
aml05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
100480380 (VCAM1)
04668 TNF signaling pathway
100480380 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100480380 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
100480380 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
100480380 (VCAM1)
05143 African trypanosomiasis
100480380 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100480380 (VCAM1)
05418 Fluid shear stress and atherosclerosis
100480380 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100480380 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aml04515
]
100480380 (VCAM1)
04090 CD molecules [BR:
aml04090
]
100480380 (VCAM1)
04091 Lectins [BR:
aml04091
]
100480380 (VCAM1)
Cell adhesion molecules [BR:
aml04515
]
Immunoglobulin superfamily
VCAM
100480380 (VCAM1)
CD molecules [BR:
aml04090
]
Proteins
100480380 (VCAM1)
Lectins [BR:
aml04091
]
I-type lectins (Siglecs)
100480380 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
C2-set
ig
Ig_2
V-set
C2-set_2
ICAM_N
Ig_6
Ig_4
Ig_5
ICAM1_3_5_D2
C1-set
C2-set_3
Motif
Other DBs
NCBI-GeneID:
100480380
NCBI-ProteinID:
XP_002928199
Ensembl:
ENSAMEG00000009597
UniProt:
G1LSS1
LinkDB
All DBs
Position
2:69728729..69747580
Genome browser
AA seq
748 aa
AA seq
DB search
MFSSQQQLKMPGKMVVTFGASNILWMVFAVSQAFKMEIFPEHRVVAQIGDVISLTCSTTG
CESPSFSWRTQIDSPLNGKVRNEGTKSTLTMDPVSFNNEHAYVCTATCGSMKLEKGIQVE
IYSFPKDPEMHLSGPLELKKPVTVTCLVPDVYPFDRLEINLLKGNDLLKSKEFLEPMDRK
SLETKSLEATLIPDQEDIGKALVCRAKLNIEEIDFEPKERETTKKLQVYISPKNTVIFVN
PYTRLQEGGSVTMTCSSEGLPAPQIFWSKKLDNGNLQLLSGNATLTLIAMRIEDSGIYVC
EGVNQVGKNGTEVELIVEEKPFIVEISPGPQVIAQIGDSVVLTCGVTGCESPSFSWRTQI
DSPLSGQVKTEGTKSTLTLSPVSFENEHSYLCTVTCGRKKLEKRISVDLYSFPRDPEIEM
SGLLVSGNPVTVSCEVPNVYPSDGLEIELFKGESLIESKTFLEDMDKKSLETKSLEMTFI
PTTEDTGKVLVCLAQLHIGEMEFEPKQRQSTQALYVNVAPRDTAILVSPSSILEEGSSVN
MTCSSNGLPAPKILWSRQLNNGHLQPLSENSTLTLTSTKMEDSGIYVCEGINQAGISRKE
VELIIQVAPKDIQLIAFPSESVKEGDTVIISCTCGNVPKTWIILKKKAETGDTVLKSRDG
AYTIHKVQLEDAGVYECESKNEVGLQLRSLTLDVKGRENNKDYFSPELLVLYCASSLIIP
AIGMIIYFARRANMKGSYSLVEAQKSKV
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgttctcatcacagcagcaactaaaaatgcctgggaagatggtcgtgacctttggagcc
tcaaatatactttggatggtgtttgcagtttctcaagcttttaaaatggagatcttcccc
gaacacagagttgttgctcagattggtgatgtcatttcactgacttgcagtacaacgggc
tgtgagtccccatctttctcttggagaacccagatagacagtccactgaatgggaaggtg
agaaatgaggggaccaagtccacattgaccatggatcctgttagtttcaacaatgaacat
gcttatgtgtgcacagcgacttgtggatctatgaaactggaaaaaggaattcaggtggag
atttattctttccctaaggacccagagatgcatctgagtggccccctagaacttaagaag
ccagtcacagtcacatgtttggtccctgatgtttacccatttgacaggctggagataaat
ttgctgaagggcaatgatctcctaaagagtaaggaatttctagagcctatggacaggaag
tccctggagaccaagagtttggaggcaaccctcattcctgaccaagaggatattgggaaa
gctcttgtttgccgagcaaaattaaacattgaggaaattgactttgagcccaaagaaagg
gagactacaaaaaaacttcaagtttacatctcacccaagaacacagttatctttgtgaat
ccctacacaaggctgcaagaaggtggttctgtgacaatgacatgttccagtgagggtctc
ccagccccacagattttctggagcaaaaaattagataatgggaatctacagctcctttct
gggaatgcaactctgactttaattgctatgaggatagaagattctggaatttatgtgtgt
gaaggagtcaatcaggttgggaaaaatggaacagaggtggaattaattgttgaagagaaa
ccattcattgttgagatctccccgggaccccaggttattgctcagattggtgactcggtt
gtgttgacatgtggtgtcacaggctgcgagtccccatctttctcttggagaacccagata
gacagccctctgagtgggcaggtgaagactgaagggaccaagtccacactgaccctgagc
cctgtgagttttgagaatgaacattcttacctgtgcactgtgacctgtggccgtaagaaa
ctggaaaagagaatcagtgtggatctctactcattccctagagatccagagattgagatg
agtggtctcctagtgagtggaaacccagtcactgtgagttgtgaggttcctaatgtgtat
ccttctgacgggctggagattgaattatttaagggggagagtctcatagagagtaaaacc
tttctggaggacatggacaagaaatctctagagactaagagtttggaaatgaccttcatc
cccaccactgaagatactggaaaagttcttgtttgcctagctcagttacatattggtgaa
atggaatttgaacccaaacaaaggcaaagtacacaggcgctttatgttaacgttgccccc
agggatacagccatcttggtcagcccctcctccatcctggaggaaggtagttctgtgaat
atgacgtgctctagcaatggccttccagctccgaaaatcctgtggagcaggcagctgaat
aatgggcatctacagcctctttctgagaattcaactctcaccttaacttctacaaaaatg
gaagattctggtatttatgtgtgtgaagggattaaccaggctggaataagcagaaaagaa
gtagagttaattatccaagttgctccgaaagacatacaacttatagcttttccttctgag
agtgtcaaggaaggagacactgtcattatctcctgtacatgtggaaatgttccaaaaact
tggataatcctgaagaaaaaagcagagacgggagacacagtgctaaagtccagagatggt
gcatataccatccacaaggtccagttagaggatgcgggagtgtacgaatgtgaatctaaa
aatgaggttggcttgcagttaagaagtttaaccctcgatgttaaaggaagagaaaataac
aaggactatttttctcctgaacttctcgtgctctattgtgcatcttccttaataatacca
gccattggaatgatcatttactttgctagaagagccaacatgaaagggtcatatagtctc
gtagaggcacagaagtccaaagtgtag
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