Ailuropoda melanoleuca (giant panda): 100481416
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Entry
100481416 CDS
T01329
Symbol
TDRD9
Name
(RefSeq) ATP-dependent RNA helicase TDRD9
KO
K18408
ATP-dependent RNA helicase TDRD9 [EC:
5.6.2.5
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aml03036
]
100481416 (TDRD9)
Enzymes [BR:
aml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
100481416 (TDRD9)
Chromosome and associated proteins [BR:
aml03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100481416 (TDRD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
DEAD
HA2_C
nSTAND3
AAA_14
FtsK_SpoIIIE
HA2_N
T2SSE
AAA_22
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
100481416
NCBI-ProteinID:
XP_034498810
LinkDB
All DBs
Position
14:40498727..40613483
Genome browser
AA seq
1377 aa
AA seq
DB search
MLRELTLDQINDWFTIGKTVTDVELLGSPPAFPAEAAREEAQRRDEAPTLGPAAQAQPQP
PPVASRRPLSRKSSEVEYINKYRQLEAREFDLYGSDQSTSGPGPRPSLAKLSNVTCIPET
NYKYPDLPINRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYILDHYIQRSAYCNIVVT
QPRKIGASSIARWISKERAWMLGGLVGYQVGLEKIATEDTKLIYMTTGVLLQKIVSAKSL
MEFTHVFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVILMSATINCKEFADYFAVPVQN
KMNPAYVFEVEGKPHSIEEYYLDDLGHIHHGRLPPCVLEEPMITKDVYEVAVSLIQMFDN
LDMKERGSKTWSGAQFVLERSSVLVFLPGLGEINYMHELLTNMVHKRLQVYPLHSSVTLE
EQKNVFLSPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWA
SKTSCNQRKGRAGRVSKGCCYRLIHRDFWDSSIPDHVVPEMLRCPLGSTLLKVKLLDLGE
PRALLATALSPPSLSDIERTILLLKEVGALAVSVQREDENPHDGELTFLGRVLAQLPVNQ
QLGKLIVLGHVFGCLDECLIIAAALSLKNFFAMPFRQHLDGYRNKVNFSGNSKSDCLALV
EAFKAWQTCRQRGELRHPKDELDWGRLNYVQIKRIREVAELYEELKNRISQFNMYVDCRR
PVADQEYVHKQRFILQVVLAGAFYPNYFTFGQPDEEMAVRELAGKDPKTTVVLKHIPSYG
FLYYKQLQSLFRQCGQVKSIVFDGAKAFVEFSRNPTERFKTLPAVYMAIKMSQLKVSLEL
NVHSAEEIEGKVQGGAVSKLRSTRVNVDFQKQTVDPMQVSFNTLDRSRTITDLLLTIDVT
EVVEVGHFWGYRIDEKNSRILKKLTAEINQLQLVPLPVHPHPDLVCLAPFADFDKESYFR
AQILYVSGNSAEVFFVDYGNRSQVDLDLLMEIPCQLLELPFQALEFKICKMRPSAKSLVC
GEHWSGGASQRFTSLVSGCALLVRVFSVVHSVLHVDVYRYSGAQDAINIRDVLIKEGYAE
LAEEPYESKQSHEALKGLFYKSVENMADLSTSSPMKNDEKYLIRVLLESFSSNKLGAPNC
KAILHGPFNPYELKCHSLTRISKFRCVWIEKESINSVIISDAPEDLHQRMLVAASLSINA
TGSTMLLRETSLMPHIPGLPALLSALFAPVMELRVDRDGKCYTGVLCGLGWNPTTGAPIL
PEHDIELAFDVQFSVEDIIEINILRAAINKLVCDGPNGSEFLGPERIAQLQSNARQKLLG
LFCQLKPRQRVVPKWHEKPYEWNQVDPKLVMEQADRESGRGKNTFLYQLHKLIVLST
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgagctcactctcgaccagatcaacgactggttcacgatcggcaagaccgtg
acggatgtggagctgctgggctcgccgcccgccttcccggccgaggcggccagggaggag
gcgcagcgccgggacgaggcgcccactttgggccccgcggcccaggcccagccccagccc
ccgcccgtggcgtccaggaggccacttagccgaaagagctcagaagtggagtatattaac
aaataccgacagcttgaagcacgagaatttgatttgtatggcagtgatcagtcaaccagt
gggccaggtccaaggccatctttggctaaattaagcaatgtgacctgcatcccagagacg
aattataaatatcctgatttgcctataaatcgatgtaaggaagaggttatttctctgata
gaaagtaattctgtggtaattatacatggcgccacgggtagtggtaaaagtactcagctc
ccacagtatatcctggatcattatattcagcgctctgcctactgcaacatcgttgtgacc
caaccccggaagataggggccagcagtatcgccagatggatcagtaaagagcgagcctgg
atgttgggtggtctggtgggctatcaggtagggttagagaaaatagcaacagaggacacc
aagttaatttatatgacaacaggggtcctacttcagaaaattgttagtgctaagagtttg
atggaattcacccatgtcttcattgatgaagtacatgagcgaactgaagaaatggatttc
ctgctgttggtagtccgcaagcttttaagaacaaattcacgttttgtgaaggtgatcctc
atgtcggccaccatcaactgcaaggagtttgcagattactttgctgttcctgttcagaac
aagatgaaccccgcatatgtttttgaagtggaaggaaagccccattcaattgaagagtat
tatctcgatgatttggggcacattcatcatggcaggcttcctccttgtgtcctggaggag
ccgatgattactaaggatgtatatgaagttgctgtctccctgatccagatgttcgataac
ttggatatgaaggagagagggagcaagacctggtcaggtgcccagtttgtgttggagcgt
agcagcgtgttggtgtttttgccaggtctgggtgaaataaactatatgcacgaacttctc
acaaacatggttcacaaaaggttacaggtttatccgctccattcaagtgtgactctagaa
gaacagaagaatgtgtttttaagtccagttcctgggtacagaaagattatcctgtccacc
aacatcgcagagagctccgtcacagttccagatgtcaaatacgttatagatttttgtttg
actagaactctggtttgtgatgaagataccaattatcagagtctgcgattgagctgggcc
tctaaaaccagttgtaatcagagaaaaggccgtgcggggcgagtatctaaagggtgctgt
tacagactgatccacagggatttctgggacagctccatccctgaccacgtcgttcccgag
atgctgcgttgtcccttaggaagcacattattgaaagtgaaattgctggacctgggtgaa
ccaagagctttgctggcaaccgccctttctccacctagtctgagtgacattgaacgaacc
atccttctactaaaggaggttggtgcacttgcagtgagtgtgcaaagagaagatgagaac
ccccatgatggcgaactgaccttcttaggaagagtcttagcccagcttcctgttaatcaa
cagctcggtaaactcatagtccttggacacgtatttggatgtctagatgaatgtcttatt
atagcggcagctctttctttgaaaaatttttttgcaatgccttttaggcagcatcttgat
gggtacaggaacaaagtgaatttctctggcaatagtaagagtgactgtcttgcactcgtc
gaggcgtttaaagcttggcagacttgcagacagagaggagagctgcggcatccaaaggat
gaacttgattgggggcggttaaattacgttcagatcaagagaatcagagaggtggctgag
ttatatgaagaactgaagaatcgaatctcccagttcaatatgtatgtggactgtcggcgg
cccgtcgcggatcaggagtatgtacacaagcagcggttcatcctgcaggtggtattggca
ggtgctttttacccaaattacttcactttcggacagcctgatgaggagatggcggtgagg
gagctggccggcaaagacccaaagacgaccgttgtgctgaaacacattccttcctatgga
tttctgtactacaaacaactacagtctctctttcgacagtgtggtcaagtcaaatccatt
gtatttgatggtgcaaaagcctttgtggagttttcacgtaatccaacagagaggtttaaa
actcttcctgcagtgtatatggcaattaagatgtctcagctgaaggtctcccttgaactg
aatgtgcactctgccgaggagatcgaaggcaaggtgcaaggaggggccgtctcaaagctc
aggagcaccagggtgaatgtggacttccagaagcagactgtagatcccatgcaagtctca
tttaacacgttagacagatcccggacaatcacagatctcctcctaacaattgatgtcaca
gaggtcgttgaggtgggacacttttggggatataggatcgatgaaaaaaactcaaggatt
ctgaaaaaacttaccgctgaaataaaccaactacagttggtgcccttgcccgtccaccca
cacccagacttggtctgtctggctccttttgctgattttgataaagaaagctacttcaga
gctcaaatcctttatgtctctgggaattccgccgaggtgttctttgtggactatggtaac
agatctcaagtagatctggatcttttaatggagattccctgtcaacttctcgaactcccg
tttcaggctttggaatttaagatttgcaaaatgcgcccctctgcaaagtctcttgtgtgt
ggcgagcactggagtggtggggccagccagcggttcacctccctggtgagtggctgcgct
ctcctcgtcagggtcttctctgtcgtgcacagcgtcctgcacgtggacgtgtaccgctac
tctggggcccaggatgccatcaacataagagatgtcctcatcaaggagggctacgctgag
ctcgcggaggagccctatgagtccaagcaaagccacgaagctctcaagggtctcttctac
aagtctgtagagaacatggcagacttgtctacatcgtctcccatgaagaatgatgaaaaa
tacctgatccgggttttgttagagagcttttcttctaataaactgggcgcccccaactgc
aaggcaatacttcatgggccttttaacccctatgaattgaagtgtcatagtttgaccaga
atatccaagttcagatgtgtttggatcgagaaggaaagcatcaactccgtgatcatcagc
gatgcccctgaggaccttcaccagaggatgctggttgcagcttccctctccatcaacgcg
acggggtccaccatgctgctgagagagacctctctgatgccacacattcccggcctcccg
gctctcctcagcgcgctgtttgcaccagtgatggagttaagggttgatcgggatggaaaa
tgctatactggagtcctttgtggtttggggtggaacccaactacaggggcccctatactc
ccagagcatgacatcgagctagcgtttgacgttcagttcagcgtggaggatattatagag
attaatattctcagggctgctattaacaagctggtgtgtgatggaccgaatggatcagag
tttcttgggccagaaagaattgcacagttacagagtaatgctcggcagaagctcctaggt
ttgttctgtcagttgaaaccaagacagagagttgtccctaagtggcatgaaaagccgtat
gaatggaatcaggtggatccaaagctggtcatggagcaggctgaccgggagagtggccga
gggaagaacacctttctctaccagctccacaaactgattgttctcagcacctag
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