Ailuropoda melanoleuca (giant panda): 100482222
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Entry
100482222 CDS
T01329
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04140
Autophagy - animal
aml04148
Efferocytosis
aml05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100482222 (VPS18)
04148 Efferocytosis
100482222 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100482222 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aml04131
]
100482222 (VPS18)
Membrane trafficking [BR:
aml04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100482222 (VPS18)
Hops complex
100482222 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf-RING_5
zf-C3HC4_2
zf-RING_16
KNOX2
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
WD40_Prp19
CNH
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
100482222
NCBI-ProteinID:
XP_002913259
Ensembl:
ENSAMEG00000016855
UniProt:
D2GW94
LinkDB
All DBs
Position
5:complement(63812216..63821197)
Genome browser
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKANEPNHVELGRKEDAKVHKMFLDHTGSHLLIALSSTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRAAEGAE
AQGFSGLFAAFADHPPPFREFPSSLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCG
RPDSLLSEERVWEYPEGVGPGASPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGSLKHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQRRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPAERTQATLLTTWLTELYLSRLGALQGDPEALNLYRETRERFRSFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIELGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEDDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAAPAPTKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQRYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgaatacgaggactctttgtcccgctcagccgtcttgcagcct
ggctgccccagcgtgggcatcccccactccgggtatgtgaatgcccagctagagaaggaa
gtgcccatcttcacaaaacagcgcattgactttaccccttctgagcgtattaccagtctt
gtcgtctcctgcaatcagctctgcatgagcctgggcaaggacaccctactccgcattgac
ttgggcaaggcaaatgaacccaaccacgtggagctgggacgcaaggaggatgctaaggtt
cacaagatgtttctggaccacactggctctcacctgctaattgctctgagcagcactgag
gtcctctatgtgaaccgtaatggacagaaggtacggccactggcacgctggaaagggcag
ctggtggagagtgtgggctggaacaaggcactgggcacagagagcagcacaggccccatc
ctggtcggcaccgcccaaggccagatcttcgaagcggagctctcagccagcgaaggtggg
ctttttggccctgctccagatctctacttccgcccattgtacgtactaaacgaagaaggg
ggtccagcacctgtgtgctccctcgaggccgagcggggccctgatgggcgtggctttgtt
atcgccaccaccaggcagcgcctcttccagttcataggtcgagcagcagagggagctgag
gcccagggcttctcggggctctttgctgccttcgcggaccacccacccccattccgtgag
ttccccagcagtctgggctacagtgagttggccttctatacccccaagttgcgctccgca
cctcgggccttcgcctggatgatgggggacggcgtgttgtatggagcactggactgcggg
cgtcctgattccctgctgagcgaggagcgagtctgggagtacccagagggggtaggtccg
ggggcgagcccgcccctggctatcgtcctgacccagttccacttcctactgctgctggct
gaccgggtggaggcagtgtgcacgctgacggggcaggtggtgctgcgggatcacttcctg
gagaagtttgggtccctgaagcacatggtgaaggactcttccacgggccacctgtgggcc
tacactgagcgtgctgtcttccgctaccatgtgcagcgggaggcccgggatgtctggcgc
acctacctggacatgaaccgctttgacctggccaaagagtattgtcgagagcgacctgac
tgcctggacacagtcctggcccgggaggccgatttctgctttcgccagcgtcgttacctg
gagagtgcccgctgctacgccctgacccagagctactttgaggagatcgccctcaagttc
ctggaggcccgacaggaggaggccctggctgagttcctgcagcgaaaactggccggtttg
aagccagccgagcgtacccaggccacactgcttaccacctggctgacggagctttacctg
agccggctcggagcactgcagggtgatcctgaggccctgaacttataccgggaaactcgg
gagcgcttccggtctttcctcagcagcccccgccacaaggagtggctctttgccagccgg
gcctccatccatgaactgcttgccagccacggggacacagaacacatggtgtacttcgct
gtgatcatgcaggactacgagcgcgtggtggcataccactgccagcatgaggcctacgag
gaggccctggctgtgcttgcccgccaccgtgacccccagctcttctacaagttctcaccc
atcctcattcgtcacataccccgccagctggtggatgcttggattgagctgggcagccgg
ctggatgcccggcagctcatccccgccctggtgaactatagccagggtggcgaggcccag
caggtgagccaggccatccgctacatggagttctgcgtgaacgtgcttggcgagacggag
caggcgattcacaactacctgctgtcgctgtacgcccgaggccagccggcctcactgctg
gcttaccttgagcaggccggcgccagcccgcaccgtgtgcattatgacctcaagtacgcg
ctgcggctctgcgctgagcacggccaccaccgtgcctgtgtccatgtctacaaggtccta
gagctgtatgaggaggctgtggacctggccctgcaggtcgacgtggacctggccaaacag
tgcgctgacttgcccgaggacgacgaggaactgcgtaagaagctgtggctgaagatcgct
cggcacgtggtgcaggaggaggaggacgtgcagacggccatggcctgcctggccagctgc
cccctgctcaagatcgaggacgtgctgcccttctttcctgacttcgtcaccatcgaccac
ttcaaggaggcgatctgcagctcgctcaaggcctacaaccaccacatccaggagctgcag
cgggagatggaagaggccacggccagtgcccagcgcatccggcgagacctgcaggagctg
cggggccgctatggcacggtggagccccaggacaagtgtgccacctgcgacttccccctg
cttaatcgccctttctaccttttcctctgtggccacatgttccatgctgactgcttgctg
caggccgtgcggcctggcctgccggcctacaagcaggcccggctcgaggagctgcagcgg
aagttgggggctgctccggcccctactaagggctctgcccgtgccaaggaggccgagggt
ggggctgcgacggcggggcccagtcgggaacagctcaaggctgacctcgatgaactggtg
gccgccgagtgcgtgtactgtggggagctgatgatccgctccattgaccggcccttcatt
gacccccagcgctatgaggaggagcacctcagttggctgtag
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