Ailuropoda melanoleuca (giant panda): 100482395
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Entry
100482395 CDS
T01329
Symbol
PABPC5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml03015
mRNA surveillance pathway
aml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100482395 (PABPC5)
09123 Folding, sorting and degradation
03018 RNA degradation
100482395 (PABPC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100482395 (PABPC5)
03041 Spliceosome [BR:
aml03041
]
100482395 (PABPC5)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100482395 (PABPC5)
mRNA cycle factors
Stress granule specific factors
100482395 (PABPC5)
Spliceosome [BR:
aml03041
]
Complex C
Other components
Complex C specific factors
100482395 (PABPC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
RRM_3
RBD_DEAH11
DUF4523
ATP-grasp_2
Motif
Other DBs
NCBI-GeneID:
100482395
NCBI-ProteinID:
XP_011235460
Ensembl:
ENSAMEG00000020114
UniProt:
G1MP66
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All DBs
Position
X:65011586..65016941
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AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKCIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKG
FGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEEATKAVDE
MNGRTVGSKPLHVTLGQARRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggagagcctaatcctgctggcaagaaaaagaagtacctaaaggctgccctg
tacgtgggtgacttggacccagatgtcacggaggacatgctatataaaaagttcaggcct
gctggccctctgcgcttcacccgaatctgccgtgaccccgtgacccgcagccccctgggc
tatggttatgttaacttccgctttcctgcagatgctgagtgggccctgaataccatgaat
tttgatttgattaatggcaaacctttccgcctcatgtggtctcagccagatgaccgctta
agaaagtctggagttggaaatatattcatcaaaaacctggacaaatgcatagacaatagg
gcccttttttatttattttctgcttttgggaacattctctcctgcaaggtcgtatgtgat
gacaatggctctaagggttatgcctatgtgcactttgacagcctggccgctgccaataga
gccatctggcacatgaatggagtgcggcttaacaaccgccaggtgtatgttggcagattc
aaattcccagaagagcgggcagctgaagtcagaaccagggatagagcaactttcaccaat
gtttttgttaaaaactttggagatgacatggatgatgaaaaactgaaggaaatctttagt
ggatatgggccaactgagagtgttaaggtaataagagatgccagtgggaaatctaagggc
tttggatttgtgaggtatgagacacacgaggctgcccaaaaggctgtattagacctgcat
ggaaagtccatcaatgggaaagttctatatgtagggcgagcacagaagaaaattgaacga
ttggctgagttaagacgaagatttgaacggctgagattaaaagaaaaaagtcggcctccg
ggggtgcctatctatattaagaacctggatgagaccatcgatgatgagaaactgaaggag
gaattttcttcctttggatcaattagccgggccaaagtgatggtggaagtagggcaaggc
aaagggtttggtgttgtttgcttctcctcttttgaagaagctaccaaagcagtggatgag
atgaatggtcgcacagtgggctccaagcccctgcatgtaaccctgggccaggccaggcgc
aggtggtga
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