KEGG   Ailuropoda melanoleuca (giant panda): 100482861
Entry
100482861         CDS       T01329                                 
Symbol
SNRNP40
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
aml  Ailuropoda melanoleuca (giant panda)
Pathway
aml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100482861 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aml03041]
    100482861 (SNRNP40)
Spliceosome [BR:aml03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100482861 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    100482861 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 100482861
NCBI-ProteinID: XP_002924017
Ensembl: ENSAMEG00000017689
LinkDB
Position
2:complement(9852832..9887249)
AA seq 358 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAAGRGPAAGQQQTAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagagcagcaaaagcgcaaaggcccagagttgccactggtcccagtcaagcggcag
cggcatgagttgctgttgggagcggcgggtcggggccccgcagcggggcagcagcagacg
gcgccgggagctttgctgcaagcgggacctccaaggtgttcctcccttcaagccccaatc
atgctgctctcaggacatgaaggggaagtgtactgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgatcgactgatattgttgtggaatgtctatggtgactgt
gataactatgccacattgaagggacacagtggggctgtgatggagctgcattataacact
gatggcagtatgctcttctccgcatccacagataaaactgtggcggtgtgggatagtgaa
acaggcgagagggttaaaaggctgaaaggacatacttcctttgtgaattcctgttatcca
gccaggaggggcccccagcttgtctgcactggcagcgatgatgggacagttaagctatgg
gacatccggaagaaagcagccatccagacatttcagaacacctaccaggtgttagctgtg
accttcaatgatacaagtgatcagattatttctggtggaatagacaacgatatcaaggtc
tgggacttgcgccaaaacaagctaacctacaccatgagaggccatgcagattcagtgact
ggcctgagtttaagttctgaaggctcttatctcttgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcctaaagagaggtgtgtgaagatatttcaagga
aatgtgcacaactttgagaagaatcttctgagatgctcttggtcacctgatggaagcaag
atagcagctggttcagctgacagatttgtgtacgtgtgggataccacaagccgcaggatt
ttgtataagctgcccggacacgctggctccatcaatgaagtggctttccaccccgatgag
cccatcattctctcagcatccagcgacaagagattgtatatgggggagattcagtga

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