Ailuropoda melanoleuca (giant panda): 100482947
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Entry
100482947 CDS
T01329
Symbol
PTBP1
Name
(RefSeq) polypyrimidine tract-binding protein 1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aml03019
]
100482947 (PTBP1)
03041 Spliceosome [BR:
aml03041
]
100482947 (PTBP1)
Messenger RNA biogenesis [BR:
aml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
100482947 (PTBP1)
Spliceosome [BR:
aml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100482947 (PTBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
100482947
NCBI-ProteinID:
XP_034515888
Ensembl:
ENSAMEG00000002867
LinkDB
All DBs
Position
4:349074..361764
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AA seq
556 aa
AA seq
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MDGIVPDIAVGTKRGSDELFSACVTNGPFIMSSSSASAANGNDSKKFKGDNRSAGVPSRV
IHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPV
LRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQ
SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS
LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAP
GIMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA
GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLGEAAG
PAGGLCSRRGSCQGSLSKLLQPTRELLACAGLRRARYVSFLGPSQALGTARPSLSSSSSV
QPPSPHRPSVSEDDLKVLFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHD
LGENHHLRVSFSKSTI
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattgtcccagatatagcagttggtacaaagcggggatccgacgagcttttc
tctgcctgtgtcactaacggaccctttatcatgagcagcagctcggcgtctgcagcaaat
gggaacgacagcaagaagtttaagggcgacaacagaagtgcaggcgtgccctccagagtg
atccacatccggaagctccccggcgacgtcaccgagggcgaggtcatttccctggggctg
cccttcgggaaggtcaccaacctcctgatgctgaaagggaagaatcaggccttcatcgag
atgaacacagaggaggctgccaacaccatggtgaactattacacctccgtgacgcccgtg
ctgcgaggccagcccatctacatccagttctccaaccacaaagagctcaagacggacagc
tcgcccaaccaggcacgggcccaggcagcactgcaggcggtgaactcggtgcagtcagga
aacttggccctggccgcctcggctgccgcggtggatgccgggatggccatggccggccag
agcccagtgctccggatcatcgtggagaacctgttctacccagtgactttggacgtgctc
caccagatcttctccaagtttggcacggttctgaagatcatcactttcaccaagaataac
cagttccaggcgctgctgcagtacgccgaccccgtgagcgcccagcacgccaagctgtct
ctggacggacagaacatctacaatgcttgctgtacgctccgcatcgacttctccaagctc
accagcctcaacgtcaaatacaacaatgacaagagtcgtgattacacgcgccctgacctg
ccctccggtgacagccagccctcgctggaccagaccatggctgccgcctttggtgcacct
ggtataatgtcagcctctccgtatgcaggagctggtttccctcccacctttgcaattcct
caagctgcaggtctctctgttcctaacgtgcatggggccctggcgcctctggccatccca
tcggcggcggcggcggcggcagcggccgggcggatcgccatcccaggcctggcaggggca
gggaattccgtcctgctggtcagcaacctcaaccccgagagagtcacaccccaaagcctc
tttattcttttcggcgtgtacggcgacgtgcagcgggtaaagatcctgttcaacaagaag
gagaacgccctggtgcagatggccgacgggagccaggcgcagctgggtgaggcggcgggg
cctgcggggggcttgtgttcgcggagggggtcctgtcaggggtctctttccaaacttctg
cagccgacgagggagttgctggcgtgtgcagggctgcggcgtgcccgttacgtgtccttc
ctgggcccctcgcaggcccttggcacagccaggccctccctgagcagcagcagcagcgtt
caacccccttctccccacaggccctctgtgtccgaggatgacctgaaggtccttttctcc
agcaacggggggatcgtcaaggggttcaagttcttccagaaggaccgcaagatggcgctg
atccagatgggctccgtggaggaggccatccaggcgctcatcgacctgcacaaccacgac
ctgggcgagaaccaccacctgcgggtctccttctccaagtccaccatctag
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integrated database retrieval system
