Ailuropoda melanoleuca (giant panda): 100484005
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Entry
100484005 CDS
T01329
Symbol
SHANK1
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
aml
Ailuropoda melanoleuca (giant panda)
Pathway
aml04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
100484005 (SHANK1)
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Paralog
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
100484005
NCBI-ProteinID:
XP_034494864
LinkDB
All DBs
Position
12
Genome browser
AA seq
2051 aa
AA seq
DB search
MTHSPASSEDEERHSASECPEGGSESDSSPDGPSRGPRGTRGQGSGAPGSLASTRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGANKDVKNNNGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGAGLTVPPALLRANSDTSMALPDWMVFAAPGTSSSGAPGPTSGPQGQSQPSAPSTK
LSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRV
GWFPSDCLEEVANRSQEGKQESRSDKAKRLFRHYTVGSYDSFDAPRSLMDGIGPGSDYII
KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG
DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPQQAKRLPP
PAISLRSKSMTSELEDMEYEQQPAPVPSMEKKRTVYQMALNKLDEILAAAQQTISASESP
GPGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDERP
YLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSG
GPLPSSSPASFDGPXPPDTRVGGREKSLYHSGFKGPLVKQTKVEGEPQKGGGLPPAPSPT
SPASPQPPPAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEAAGGGGG
GSSAPSPAPAMSPVPPSPSPVPTPTSPSGPATLDFTSQFGAALVGAARREGGWQNEARRR
STLFLSTDAGDEDGGDGGLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSSGGYG
AYGAGGRAYGGSGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGG
GPSQPPPRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEK
SLPASPPAARRSLLHRLPPTAPGVGPLLLQLGPEPPPPHPGVSKAWRSGAPEEPERLPLH
VRFLENCQPRASGAGGRGPPSEDGPGVQPPSPRRSVPPSPTSPRGSEENGLPLLVLPPPA
PSVDVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPTPTTPLPPVPPPPVA
AAPPTLDSTASSLTSYDSEVATLTQGAPVAPGDPPPPGPPAPAAPAPPAPQPGPDPPPGT
DSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGGGGGASVASGPELLDTYV
AYLDGQAFGGSGTPGPPYPPQLMTPSKLRGRALGTGGGLRPGPSGGLRDPVTPTSPTVSV
TGAGTDGLLALSGCTGPSTAGMAGGPVPIEPEGPPVPLPSASSLPRKLLPWEEGPGPPPP
PLPGPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGSGDSHHGGA
GYVPERTSSLQRQRLSEDSQSSILSKPVSSLFQNWPKPPLPPLPTGSGVPPSAAAAPGAT
SPSASSSTSTRHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYP
GLFDIRGSPTGGAGGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPF
GAKPLGFWTKFDVADWLEWLGLAEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMN
IDRALKFFLER
NT seq
6156 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcatcaagcgaggacgaggaacgccacagtgccagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggcccagcagaggcccccgggggacc
cggggccagggcagcggagcacctggtagtctggcctccacccgaggcctccagggccgc
tccatgtctgtcccggacgacgcccacttcagcatgatggtcttccggattggcatcccg
gacctgcaccagacaaaatgtctgcgcttcaaccccgatgccaccatctggacagccaag
cagcaggtgctctgcgccctgagcgagagcctgcaggatgtgctcaactacggtctgttc
cagccggccacctcaggccgcgatgccaactttctggaggaggagcggctgcttcgggag
tacccccagtcttttgagaagggggtgccctacctggagttccgatacaagacccgggtt
tacaaacagaccaacctggatgagaagcagctggccaaattgcacacgaagacggggttg
aagaagttcctggagtatgtgcagctcgggacgtccgacaaggtggcgaggctgctggac
aaggggctggaccccaattatcatgactcggattcaggagagacccccctgactctggct
gcccagactgaaggctccgtagaggtgattcgaaccctgtgcctgggaggggcccacatc
gacttccgggcccgggatggcatgacagcgctacacaaagctgcgtgtgcccgtcactgc
ctcgctctcacggcactcctggacctcgggggctcccccaactacaaggaccgccgaggc
ctgacccctctgttccatacggctatggtggggggcgacccccgctgctgcgagctgctg
ctgtacaacagagcccagctgggcattgctgatgagaacggctggcaggagattcaccag
gcctgccagcggggtcactctcagcacctggaacacctgctcttctacggggctgagccc
ggagcccagaacgcctcggggaacacggccttgcacatctgcgccctctacaataaggag
acctgtgctcggatcctcctctatcgaggggccaacaaggatgtgaagaataacaatgga
cagacccccttccaggtggcagtgattgctgggaattttgaattgggggagctgatccga
aaccatcgagaacaggatgtggtgcccttccaggagtcccccaagtatgcagcccggcga
cggggacccccaggcgcagggctgacagtgcccccggcactgcttcgggccaacagtgat
accagcatggccctgcctgactggatggtgtttgccgccccggggacctcgtcctctggg
gcccctggccctacctcagggccccagggccagtcgcagccctcggctcccagcaccaag
ctcagcagtgggactctccgaagtgccagcagcccccggggcgcccgggcccgctcccca
tcccgcgggaggcaccccgaagaggccaagaggcagccccgtggacggcccagctccagc
gggacgcccagggaagggccagcagggggcacggggggctcggggggccctgggggctcc
ctgggcagccgcgggaggcgcaggaagctctactcagcggtacccggacgctccttcatg
gccgtgaagtcttaccaggcccaagcggagggggagatttccctgagcaagggggagaag
atcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgtgtt
ggctggttcccctctgactgcctagaagaggtggcgaaccgctcccaggagggaaagcaa
gaaagccgcagcgacaaggcaaagagactcttccggcattataccgtgggctcctacgac
agctttgatgccccaagaagcttgatggatgggattggcccagggagtgattacatcatt
aaagagaagacggtcttgctgcagaagaaggacagtgaggggtttgggttcgtgcttcgg
ggggccaaggcgcagacccccatcgaggagttcacccccaccccggccttcccggcgctg
cagtatctggagtctgtggacgagggtggcgtggcatggagagctggactgaggatggga
gacttcctcatcgaggtgaacgggcagaacgtggtgaaggttggccaccggcaggtggtg
aacatgatccgccaagggggcaacacgctgatggtcaaggtggtgatggtcaccaggcac
ccggacatggatgaggctgtccataagaaagcaccccagcaggctaagcggctcccgccc
ccagccatctctctgcgttccaagtctatgacttcagagctggaggacatggagtatgag
cagcagcctgcgccggtgcccagcatggagaaaaagcggaccgtgtatcagatggctctc
aacaaactggatgaaattttggcggcagcccagcagaccatcagtgcaagcgagagtcct
ggacctggtggccttgcgtcgctgggcaaacaccggcccaaaggcttctttgccacggag
tcaagcttcgatccgcaccaccgctcgcagccaagttatgaacgtccttcttacctgcct
ccgggacctgggcttatgctccggcaaaaatctattggggctgcagaagatgaaagaccc
tacctagcccccccagccatgaagttcagtcgcagcctgtctgtgcctggctcggaggac
atccccccgccgcccaccacgtccccaccggagcccccctacagcacacctccagccccc
tcctcctctggccgcctcaccccatcccccagaggggggcccttcaaccccagttcgggt
ggccccctcccctcctcttcccccgcatcctttgatggacccnntccccccgacacgcgt
gtagggggccgtgagaagagcctgtaccacagcggtttcaaagggcccctggtcaagcag
accaaagtcgaaggcgagcctcagaagggcggcggcctccctcccgccccctcgcccacg
tctccggcgtccccgcagccgccgccggccgcggccgccccctcggagaagaactccatc
cccatccctaccatcatcatcaaggctccgtccaccagtagcagcggccgcagcagccag
ggcagcagcaccgaggcggaaccccccacccagcccgaggctgccggtggcggcggcggc
ggctcctcggcgccgagccccgccccggccatgtctccggtgccgccgtccccctcgccc
gtgcccacccccacctcgcccagcggccccgccaccctggatttcaccagccagttcgga
gcggccctggtgggggcggcccggagggaagggggctggcagaacgaagcccgccggcga
tccacgctcttcctctccaccgacgcgggggacgaggatggcggcgacggcgggctgggc
ccaggggcgcccccgggtccccggctgcgccactcgaaatccatcgatgaaggcatgttc
tccgccgagccctacctccggctggagtctgcaggcgcggggagtagcggcggctacggg
gcttacggggctggcggccgcgcctacgggggcagcgggggcagcagcgccttcaccagc
ttcctgccgccccgacccctggtccacccgctgaccggcaaggccctggaccccgcctcc
ccgctcgggctggccctggcagcccgagagcgggcgctgaaggagtcctcggagggtggt
gggccctcccagccccctccaaggcccccatcgccccgctacgaggccccgccgcccacc
ccacaccaccactcgccccacgcccaccatgagccagtgctgcgtctctggggggcctca
ccaccggaccccgcccgccgggagctggggtaccgggcaggcctgggcagccaggagaag
tcccttccggccagccctccagctgcccgacgctccttgctgcaccgcttgccccccaca
gctcccggggtcgggcccctcctcctccagctggggccggagccaccgcccccgcacccc
ggggtgagcaaggcgtggaggtcgggagcccccgaggagccagaacggctgcccctacac
gtgcggttccttgagaactgccagcccagagccagtggggcggggggaaggggacccccc
tcggaagacgggccgggggttcagccgcccagcccacgccggtccgtcccgccctcgccg
acctccccgcggggcagtgaagagaatgggcttcccctgctagtcctgccgccccctgct
ccctccgtggatgtggaagatggcgaattcctctttgtggaaccgctgcccccgcctctg
gagttctccaacagcttcgagaagccagagtcgccactcacacctgggcctccgcatccg
ctgccggacccacccaccccaaccaccccactgccccctgtgccaccacctcctgttgcc
gccgcacctcccaccctggactccacagcatccagcctgacttcctatgacagtgaagtg
gccacactgacccagggggcccccgtggctccaggggacccccctccgccaggcccaccg
gccccggctgcccctgctcctccggccccgcagcctggtccagacccacctcctggcacc
gattcgggtattgaggaggtggacagtcggagcagcagtgaccaccctctggagaccatt
agcagcgcgtccacactgagcagcctttctgccgaaggtggtggcagcgccggaggcggt
ggtggcggcggcgggggggccagtgtggccagtgggccagagcttctggacacatacgtg
gcctacctggacggccaggccttcggggggagtggtactcctggcccaccatatcccccg
cagctcatgactccttctaagctccggggccgggctctggggactggtggaggcctgagg
cccggccctagtgggggactgcgggaccctgtcactcccaccagccccaccgtctccgtg
acaggggctggaacggatgggctgctggccctgagcggttgcacaggaccttcaacggcg
ggtatggctgggggtccggtgcctatagagccagaaggcccgccagtgcccttgccatcg
gcctcctctctgcctcggaagctgctgccctgggaggagggcccgggcccaccgccacca
cccctgcccgggcccctggcccagcctcaggcctcagccttggccacggtaaaagccagc
atcatcagtgaactcagctccaagcttcagcaatttgggggctcctcggcagctggtggc
gctctgccctgggcccggggaggcagcgggggaagcggggacagccaccacgggggagcc
ggctacgtcccagagaggacctcttccctgcagcggcagagactctctgaagactcccag
tcctcgatcctctccaaacctgtcagcagcctgtttcagaactggcccaaaccacctctg
ccgccactccccacaggaagcggggtccccccttcagccgctgcagctccgggggccacc
tcaccctcagcctcctcctccacgtccacccgccacctccagggcgtggagttcgagatg
cggccacccctgctccgccgggcccccagcccctcactgctgcccgcctcggagcacaag
gtcagccctgcgcccaggccctcgtccctgcccatcctgccttccggacccctgtatccg
ggcctctttgacatccgcggctccccaaccgggggggcaggaggctcagctgaccctttt
gcccctgtcttcgtgccaccacaccccgggatatccggggggcttggtggagccttgtca
ggggcctcccgttccctctcaccaacccgcctgctttcgctgcccccggacaagcccttc
ggcgctaaacctctggggttctggaccaagttcgacgtggctgattggctcgagtggctg
ggcttggctgagcaccgagcacagttcctggaccacgagatcgatggctcccatctgccc
gccttgaccaaggaggattacgtcgatctgggcgtgaccagggtgggccaccgcatgaac
atcgaccgggctctcaaattcttcctggagaggtga
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