Ailuropoda melanoleuca (giant panda): 100484399
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Entry
100484399 CDS
T01329
Symbol
IGHMBP2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aml03009
]
100484399 (IGHMBP2)
03012 Translation factors [BR:
aml03012
]
100484399 (IGHMBP2)
Enzymes [BR:
aml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100484399 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
100484399 (IGHMBP2)
Ribosome biogenesis [BR:
aml03009
]
Eukaryotic type
Other ribosome biogenesis factors
100484399 (IGHMBP2)
Translation factors [BR:
aml03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100484399 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
ResIII
DEAD
nSTAND3
SLFN-g3_helicase
AAA_22
IstB_IS21
AAA_16
Helicase_RecD
UvrD-helicase
AAA_25
Flavi_DEAD
Zot
AAA
DnaB_C
PhoH
ABC_tran
NPHP3_N
NTPase_1
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
100484399
NCBI-ProteinID:
XP_002929345
Ensembl:
ENSAMEG00000008568
LinkDB
All DBs
Position
16:86809146..86835807
Genome browser
AA seq
1007 aa
AA seq
DB search
MATAAVESFVTKQLDLLELERDAEVEERRSWQENISPKELQSRGVCLLKLQASSQRTGLY
GRLLVTFEPRRCTSAPVLPSNSFTSGDIVGLYDEGSQLATGILTRITQRSVTVAFDESHD
FQLSLDREQSYRLLKLANDVTYKRLKKALVTLKKYHSGPASSLIEVLFGGSAPSPASEIQ
PPLFCNASLDASQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAP
SNIAVDNLVERLARCKQRILRLGHPARLLESIQQHSLDAVLARSDNAQIVADIRKDIDQA
FAKNRQTQDKREKSSVWSEIKLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKL
LPDSHFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLM
ERLAEEHGARVVRTLTVQYRMHRAIMQWASDALYHGQLTAHPSVAGHLLRDLPGVAATEE
TGIPLLLVDTAGCGLFELEEEDDQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNL
QVDLLRQSLAHRHPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVVCDSRTVNNHAFLKTLVDHFTEHGEVRTAFEYLDDIIPENYSHESSQGHGQTG
AKPHGSAALARKPPGGRPQEGAQGARAAARLEQKRPGGKPSGPEVPSQPTLNGGGPEGAG
SRDRAERFRAKIAEFVASEKTQLEFPASLNSHDRMWIHQIAEEHGLRHDSTGEGKKRFIT
VSKRAPPRPTTPXPTPPAPPPPAGAGSQTPVGPRAPGPTQTDPPLGEPSSQDPLNLKALH
LERLQREKSRQERPAKEGPAKEGQQASRSGLRTLPEKKKKKEAKGHAAVDLPGEEDFDAL
VAAAIKADNSCGFTKCTASVVTLGQLCLHCGRRFCLSHHLPEIHGCGERARAHARQRISR
EGVLYAGSGTKDRSLDPAKRAQLQRRLDKKLDELTSQRKSKRKEKEK
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggccacggcggctgtggagagcttcgtgaccaagcagttggacctgctggagctcgag
agagacgcggaggtcgaggagcgcaggtcttggcaggaaaacatctctccgaaagaactg
cagagccgaggtgtgtgtttgctgaagctgcaggcgtccagccagcggactgggctgtat
gggcggctgctggtcacctttgagcccaggagatgtacgtctgccccggtgcttcccagc
aacagcttcacttcaggcgatatagtgggtctgtatgacgaaggcagtcagctggccacg
gggatcctgacccggatcacgcagagatcggtcacggtggcctttgatgagtcccatgac
ttccagctgagcttggaccgggagcagtcctacagactgttaaagctggccaatgatgtc
acttacaagcgactgaaaaaggctctggtcaccctgaagaagtaccattccggccctgcg
tcctcgctcatagaggtcctctttggtgggtcagcccccagtcctgccagtgagatacag
ccaccgctgttctgtaacgcttccctggatgcctcccagaaggaagcggtctccttcgcg
ctgtcccagaaagagctggccatcatccatgggcctcctggcaccgggaagaccaccacc
gtggtcgagatcattcttcaggctgtgaggcagggcttaaaggttctgtgctgtgctccc
tctaacattgccgtggacaacctggtagagcgtctggctcggtgtaagcagaggatcctg
cgcctcgggcaccctgcccgcctgctggagtctattcagcagcattccctggacgcggtg
ttagcacggagtgacaacgcccagatcgtcgcagacatcagaaaggacatcgatcaggcc
ttcgcgaagaacaggcagacccaggacaagagagagaagagtagtgtttggagtgaaatc
aagctgttgaggaaggagctgaaggagagggaggaggccgcgatgctggagagcctcacg
tcggctgcggtggtgctggcgacaaacacaggtgcttcttccgatggccctctgaagctg
ctgcccgacagccacttcgacgtggtggtcatcgatgagtgcgcccaggccctggaagcc
agctgctggatccccctgctgaaggccaggaagtgcatcctggctggagatcacaagcag
ctgccccccaccacggtctctcacaaggctgccctggcggggctgtcgctgagcctgatg
gagcgcctggcggaggagcacggcgcgcgggtggtgcggacgctgacggtgcagtaccgc
atgcaccgggccatcatgcagtgggcctcggacgccctgtaccacgggcagctcacagcc
cacccttccgtggctgggcacctcctgcgggacctcccaggagtggctgcgacggaggag
acgggcatccccctgctgctcgtggacacggctggctgtgggctgtttgaacttgaagag
gaggacgaccagtctaaggggaaccctggtgaagtgcgccttgtcagtctgcacatccag
gccctggtggacgctggtgtccaagcaagtgacattgccgtcatcacaccgtacaacctc
caggtggacctgctcaggcagagccttgcccacaggcaccccgagcttgaaatcaagtca
gtcgatggtttccaaggccgagagaaggaggctgtggtcctgtcctttgtcagatccaac
aggaaaggtgaagtgggcttccttgccgaggaccggcggatcaacgttgctgtcacccgc
gctcggcgccatgtggcggtcgtgtgtgattctcgcactgttaacaaccatgccttcttg
aagaccctggtagatcacttcacagagcatggggaagtacgcacggcctttgagtatctt
gatgacatcatccctgaaaactactcccatgagagctcccagggccacggccaaaccggt
gcgaagccccacggctctgcggcgctggccaggaagcctcccgggggccggccgcaggag
ggggcccagggggccagagcagctgccaggctggagcagaagaggccgggtgggaagccc
tcgggccctgaggtcccttctcagcccaccctcaacggaggcggcccagagggagcgggg
agcagagaccgtgcagagcgcttcagggccaagatcgctgagtttgtggcgagtgagaaa
actcagttggagtttcctgcttccctgaactcccacgacaggatgtggatccaccagata
gccgaagagcatgggctgaggcacgacagcaccggggaagggaagaagaggttcatcacc
gtgagcaagagagccccaccccgccccaccaccccancacccaccccaccggccccaccg
ccaccagcaggggctggcagccaaacccctgtcggtcccagggcccccggccccacacag
accgatcctcctcttggggagccgagcagccaggaccctctgaatctgaaggccctgcac
ttggaaaggctgcagagggagaagagcaggcaggagcggccagccaaggaggggccagcc
aaggaggggcagcaggcctcgcgctccgggctgcgcacgttaccggagaagaagaaaaag
aaggaagcaaaagggcacgcggccgtagatttgcccggcgaggaggactttgatgccctg
gtcgcggctgccatcaaggctgataacagctgtggcttcacaaagtgcacggccagcgtc
gtgactctgggccagctctgtctgcactgcggccgccgcttctgccttagccaccacctg
cccgagatccatggctgtggggagagggctcgtgcccacgcccggcagaggatcagccgg
gaaggagtcctctacgctggcagtgggaccaaggacaggtccctggacccggccaagagg
gcccagctccagaggaggctggataagaagctggatgagctgacgagccagaggaagagt
aaacggaaggagaaggaaaagtga
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