Ailuropoda melanoleuca (giant panda): 109489089
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Entry
109489089 CDS
T01329
Symbol
PCDHB1
Name
(RefSeq) protocadherin beta-1
KO
K16494
protocadherin beta
Organism
aml
Ailuropoda melanoleuca (giant panda)
Brite
KEGG Orthology (KO) [BR:
aml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aml04515
]
109489089 (PCDHB1)
Cell adhesion molecules [BR:
aml04515
]
Cadherins
Protocadherins
109489089 (PCDHB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Ly49
Motif
Other DBs
NCBI-GeneID:
109489089
NCBI-ProteinID:
XP_019651613
Ensembl:
ENSAMEG00000020138
UniProt:
G1MP90
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All DBs
Position
3:28906447..28910386
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AA seq
818 aa
AA seq
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MAVAHRKLLRSRQVGSLLFLLCISVGSAATIRYSVAEEMESGSFVANVAKDLGLEVGKLA
ARGARLVSEGNKLHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEIVLAEPLQSFRVE
VRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSPNAYFHL
HTRFRSHGPKYAELVLDKPLDREEQPEVNLTITAVDGGSPPKSGIAYIRVKVLDVNDHVP
LFSRLVYRAQVPENSANGSLVATVSATDLDEGSNKEITYSLAQNPEAVLQTFQIDSQTGE
VRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTVSSVSSPLPEDS
PLQTVVALFSIRDRDVRVGGKITCFLREDLPFAVRPTFQNSYSLVTDRGLDREEVSGYNI
TVVAMDTGPPSLFTETVIEVLISDINDNPPIFQEDSYILTVRENNSPAIFIGKVHAEDLD
LGENAQVTYTLLPPQSGDLSVFAYISINSDNGKLYALRTMDYEAIQNFQFVVKATDGGFL
SLSSQVTVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSADAGYLVTKVVAVDGDSGQN
SWLSYHLLKATDPGLFSVQQQNGEIRTLRQISERDPVIQKLTILVQDHGQPALSTTASLN
ILLVDGFSEPYLQFRDPSKNPTRVNPSTKYLVISLAVLSFLFLLSVTVIFVIHIYQKVKY
REKFTVQEHFYDDCNFPNNLVQGGANGSLSQPCPYEMCSATGTSNSEFRFLKRFMPNFPF
PHGTGEAKTEAGSSLPPDSDRNRSRGSEDHGRVPDNCM
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcgcacagaaaactcctgcggagcaggcaagtagggtctcttctctttttg
ctgtgcatatctgtggggagtgcggccaccatccgctattcagtggcggaagagatggag
agcggttcgtttgtggctaatgtggctaaggacctggggctggaggtagggaagctggct
gcgcgcggggcgcggctggtttccgaaggcaacaaactgcatttccggctccaccgcaag
acaggggatctgttcgtgaaggagaaactggatagggagtcactgtgcggcaaagctgac
ccgtgtgttctgcactttgaaatagtcctggctgagccgctgcagtcctttcgtgtggag
gtcagggtatttgatatcaatgacaatgccccggttttcctgaacaaggagccgctttta
aagattccggagagcacacctctgggttcacgttttcctctgcagagcgcccaggacctg
gacgtgggcctcaatggtcttcaaaactacaccttgagccccaacgcgtatttccacctg
catacccgctttcgcagccatgggcccaaatatgccgagctggtcctggataagcccctg
gacagagaggagcagcctgaggtcaacctgacaattacggcggtggacggcgggtcccca
cccaagtctggcatcgcctacatccgcgtgaaggttctggacgtcaatgaccacgtgccc
ctgttctctaggctggtgtaccgcgctcaggtaccagaaaatagcgccaatggttcgttg
gtggccactgtgagtgccacagacctggacgagggctccaacaaggaaattacttactcc
ttagctcaaaacccagaagcagttctccagacatttcagattgactctcaaactggagag
gttcgactgagagggcccctagattttgaagcaattgaaacatacgatattgacattcaa
gccaccgacggaggaggcctctctgcccacagcaaagtcctggtggaagtggtggatgtt
aatgacaatcctcctgaggtgacagtctcctctgtgtccagccctctccctgaggactcc
ccactacaaactgtcgtggcccttttctctattcgagaccgggacgttcgggtgggagga
aaaatcacctgcttcctcagagaagaccttccttttgcagtcagacccactttccagaat
tcttactcactggttactgacagaggcttggatcgggaagaagtttcaggctataatatc
accgtcgttgccatggatactgggccacccagtctgttcacagaaactgtgattgaggtg
ctaatatctgacattaatgacaatcccccaatatttcaggaagactcctacattttgact
gttcgagaaaacaacagcccagcaatttttattggcaaagttcacgctgaggatctagat
ttgggtgagaatgcccaagttacatatactctgctgcctccacagagtggagatttatcc
gtctttgcttacatctccataaattcagacaacgggaagctctatgcactgagaaccatg
gattatgaggccattcaaaattttcagtttgtggtaaaggcaactgatgggggcttcctg
tcactgagtagccaggttactgtcagagtggttgttctggatgacaatgacaaccgccca
atgatcttgtacccactgcagaatggcaccttgccctgcaatgacctggtgcccaggtct
gcagatgcaggctacctggtgaccaaggtagtggctgtggatggtgactcaggtcagaat
tcttggctttcatatcatctccttaaggccactgaccctgggttattctctgttcaacaa
caaaatggggaaatccgcacattgcggcagatatctgagagagaccccgtgattcagaaa
ctgaccattcttgttcaggatcatggccaaccggctctatccactactgcctcactcaac
atcttgctggtagatggtttttctgaaccctatctgcagttccgggatccttccaagaat
cctacaagggtaaatccatccactaaatatttggtcatttctctggctgtgctttctttt
ctctttctcctgtctgtcacagtgatctttgttatacatatctaccagaaggttaaatat
agagaaaagttcacagttcaagagcatttctatgatgactgtaatttccctaacaacctg
gtacaaggtggggccaacggatcgttatctcagccgtgtccctatgaaatgtgctcagcc
actggcaccagcaatagtgagtttcggtttcttaagcgctttatgcccaacttccccttc
ccccatggcactggagaggcaaaaacagaggctggctccagtctaccaccagattctgat
aggaataggtctcgggggtcagaggaccatggccgagtacctgacaactgtatgtag
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