Amycolatopsis mediterranei S699: AMES_0655
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Entry
AMES_0655 CDS
T02190
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amm
Amycolatopsis mediterranei S699
Pathway
amm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMES_0655 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amm03021
]
AMES_0655 (rpoC)
03400 DNA repair and recombination proteins [BR:
amm03400
]
AMES_0655 (rpoC)
Enzymes [BR:
amm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMES_0655 (rpoC)
Transcription machinery [BR:
amm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMES_0655 (rpoC)
DNA repair and recombination proteins [BR:
amm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMES_0655 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ART
Motif
Other DBs
NCBI-ProteinID:
AFO74191
UniProt:
A0A9R0U633
LinkDB
All DBs
Position
729945..733856
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITGVNTELRHNDLPTLENEIGVERKNLETKRDADIEARAQKLEAD
LAALEAEGAKSDVRRKVKEGGEREMRQLRDRAGRELDRLEEVWTTFTKLDTRQLIADELL
YRELVDRYGEYFTGGMGAEAIQKLATEFDVSAEADNLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
PQVWDVLEEVITGHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLTETAEGAGN
AYSSPAEAIMAYDRKALSLHAPVKIRITDRQPAKADEARLAEKGWEPGKAWLAETTLGRV
LFNELLPADYPFINEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVLTPVGKKAILDEYEGKASQVEKRYQRGQLSHAERNNELVKVWTQATEEVHKIMET
ALPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTTRGIMMPIGEDIGDGKVL
RDQHVETSVYARNLATDAVDAKGNVVLNAGDDIGDPAIDKLLSSGISKVKVRSVLTCESV
VGICATCYGRSMATGLLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VQELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGGEEIVFDKLSKRQRLANTP
NGPLGDGDHVHVGQQLLEGTPDPHEVLRVMGPREAQIHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGATDFLPGELPERTKFEATNRAAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINKYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaactttttcgatgagctccgcattggtctcgccacggccgacgacatc
cgtcagtggtcgtacggcgaggtcaagaagccggagaccatcaactaccggacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggtgttccctcccgcctgggctacctgctggacctg
gcgccgaaggacctcgagaagatcatctacttcgcggcttacgtcatcaccggcgtgaac
acggagctgcgccacaacgacctgccgaccctcgagaacgagatcggcgtcgagcgcaag
aacctcgagaccaagcgtgacgccgacatcgaggcgcgtgcgcagaagctcgaagccgac
ctggccgcgctggaggcggagggcgccaagtccgacgtccgccgcaaggtcaaggagggc
ggcgagcgcgagatgcgccagctgcgcgaccgcgccggccgcgagctggaccgcctcgag
gaggtctggacgaccttcacgaagctcgacacccgccagctgatcgccgacgagctgctc
taccgcgagctcgtcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtctccgcggaggcagacaacctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgcgctgaagcggctcaaggtcgtcgcg
gccttccaggccaccggcaacgacccgcgcggcatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacgtcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcgggcgtccggtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaaggacatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgctcgcgg
ccgcaggtgtgggacgtgctggaagaggtcatcaccggccacccggtgatgctgaaccgc
gcgccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcggcgaacaacatcctgtcgccggcgtcgggccgcccgctcgccatgccgcggctggac
atggtcaccggcctgttccacctgacccgcctcaccgagacggccgagggcgcgggcaac
gcgtactcgtcgccggccgaggcgatcatggcctacgaccgcaaggcgctgagcctgcac
gctccggtcaagatccgcatcaccgaccgtcagccggcgaaggccgacgaggcgcggctc
gcggagaagggctgggagccgggcaaggcgtggctggccgagacgaccctgggccgcgtg
ctcttcaacgagctgctgccggcggactacccgttcatcaacgagccgatgccgaagaag
cggcaggccgcgatcgtgaacgacctcgccgagcggtactcgatgacgcaggtcgcgcag
accctggaccgcctcaaggacgccggtttctactgggcgacccgctcgggcgtcaccgtc
gccatctcggacgtgctcaccccggtgggcaagaaggccatcctcgacgagtacgagggc
aaggcctcccaggtcgagaagcgctaccagcgtggtcagctgtcgcacgccgagcggaac
aacgagctcgtcaaggtgtggacgcaggccaccgaagaggtccacaagatcatggagacg
gcgctaccggacgacaacccgatcgccatgatcgtgaagtcgggtgccgccggtaacatg
acgcaggtccggtccctggccggtatgcgtggcctggtgtcgaacccgaagggtgagtac
atcccgcgtccgatcaaggccaacttccgtgagggcctgtcggtggcggagtacttcatc
gccacgcacggtgcccggaagggcctggcggacacggcgctgcggaccgccgactcgggt
tacctgacccggcgtctggtggacgtctcgcaggacgtcatcgtccgcgagaccgactgc
ggcaccacccgcggcatcatgatgccgatcggcgaggacatcggcgacggcaaggtcctg
cgcgaccagcacgtcgagacctccgtgtacgcgcggaacctcgcgacggacgcggtggac
gccaagggcaacgtcgtgctgaacgccggcgacgacatcggcgacccggccatcgacaag
ctgctctccagcggcatctcgaaggtcaaggtccgctcggtgctgacctgcgagtcggtc
gtcggtatctgcgcgacctgctacggccgctcgatggcgaccggtctgctcgtcgacgtc
ggcgaggcggtgggtatcgtcgccgcccagtcgatcggtgagccgggtacgcagctgacg
atgcgtacgttccaccagggtggtgtggccggtgacgacatcacgaccggtctgccgcgt
gtccaggagctgttcgaggcccgcgtcccgaagggcaaggcgcccatcgccgacgtcgac
ggccgcgtgcggatcgaggagagcgagcggttctggaagatcaccctcatcccggacgac
gggggcgaggagatcgtcttcgacaagctgtccaagcggcagcggctcgcgaacaccccg
aacggcccgctgggcgacggtgaccacgtgcacgtcggccagcagctgctcgagggcacg
ccggacccgcacgaggtgctgcgggtcatggggccgcgcgaggcgcagatccacctggtg
gacgaggtccagaaggtgtaccgggcgcagggcgtgtcgatccacgacaagcacatcgag
gtcatcgtccggcagatgctgcgccgggtgacgatcatcgactccggggccacggacttc
ctgccgggcgagctgcccgagcggaccaagttcgaggcgacgaaccgggccgcggtcgcc
gaaggcggcgagccggcttcgggccgtccggtgctgatggggatcacgaaggcgtcgctc
accacggactcgtggctgtcggcggcgtcgttccaggagaccacgcgagtcctgaccgac
gcggcgatcaacggccgctcggacaagctcgtgggcctcaaggagaacgtgatcatcggt
aagctgatcccggccggtacgggcatcaacaagtaccgcaacatccaggtgcagccgacc
gaggaggcccgggtcgcggcgtacgcgatcccgtcctacgacgacggttactacaccccg
gacgtgttcggtacgggtaccggtgccgcggttccgctggacgactacgacttcggccgc
gacttccgctga
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