Amycolatopsis mediterranei S699: AMES_2612
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Entry
AMES_2612 CDS
T02190
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amm
Amycolatopsis mediterranei S699
Brite
KEGG Orthology (KO) [BR:
amm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amm03016
]
AMES_2612 (rnd)
Enzymes [BR:
amm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AMES_2612 (rnd)
Transfer RNA biogenesis [BR:
amm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AMES_2612 (rnd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AFO76148
UniProt:
A0A9R0U7Z0
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Position
complement(2836729..2837952)
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AA seq
407 aa
AA seq
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MEIESTGGPVLLREPAEGTPPVITDAAELAEACAKLAAGTGAVAVDTERASGYRYFPKAY
LVQLRREGAGTVLIDPIALDGELAPLREVLNSLEWVLHAASQDLPCLAELGLHPAALFDT
ELAGRLAGYERVALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLIQLRE
KLEAELGAQGKLEWARQEFEFVRTAPPPPPRAEPWRRTSGVHKIRSPRGLAAVRELWQAR
DELARKRDRAPSRILPDSAIVNAVTADPKTVEELQALPVFSGRVQRKYTASWLRHLQAAK
ALPASELPSPSQPTDGPPPVNRWADKDPDAAARLSAARAALTAIAEDRRLPVENLLLPDL
VRRTCWRPPAETDEDSVAEVLRASGARPWQVELTAAVLSKALQTTAS
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgagtccacgggcggccctgtgctgctacgcgaacccgccgagggcacaccc
ccggtgatcaccgacgccgccgagctggccgaagcctgcgccaagctcgccgcgggcacc
ggtgcggtcgccgtcgacaccgaacgcgcgtccggctaccggtacttccccaaggcctac
ctcgtgcagctgcgccgcgaaggcgccggcacggtgctgatcgacccgatcgcgctggac
ggcgaactggccccgctgcgcgaagtcctgaattccctggagtgggtgctgcacgccgcc
tcccaggacctcccctgcctcgccgagctgggcctgcacccggcggcgctgttcgacacc
gagctggccggccggctggcgggctacgaacgcgtcgcgctgggaacgctcgtcgagctg
ctgctggggtacaccctcgagaagggccacagcgcggccgactggtcgaagcggccgctg
ccggtcgactggctgaactacgccgccctcgacgtcgagctgctcatccagctgcgggaa
aagctggaagcggagctgggcgcccaaggcaagctggagtgggcgcggcaggagttcgag
ttcgtgcggacggccccgccgccgcccccgcgggccgagccgtggcgccggacgtccggc
gtgcacaagatccgcagcccgcgcggtctcgcggcggtccgcgaactgtggcaggcgcgc
gacgagctggcccgcaaacgcgaccgcgcaccgagccggatcctgccggacagcgcgatc
gtcaacgctgtcacggccgaccccaagacggtcgaagagctgcaggcgctgccggtgttc
agcggccgcgtccagcgcaagtacacggcgagctggctgcgccacctgcaggcggccaag
gcgctccccgcttccgagctgccgtcaccgtcccaaccgacggacggcccgcccccggtg
aaccgctgggcggacaaggacccggacgcggcggcccgcttgtcggcggcccgcgcggcc
ttgacggccatcgcggaggaccgccggctcccggtggagaacctgctgctgccggacctg
gtccgccgcacgtgctggcgcccgccggccgaaacggacgaggactcggtggcggaagtc
ctgcgcgcgagcggcgcccggccgtggcaggtcgagctgacggcggcggtgctgagcaag
gcgttgcagaccaccgcttcctga
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