Amycolatopsis mediterranei S699: AMES_5796
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Entry
AMES_5796 CDS
T02190
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amm
Amycolatopsis mediterranei S699
Pathway
amm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMES_5796 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amm03021
]
AMES_5796 (rho)
03019 Messenger RNA biogenesis [BR:
amm03019
]
AMES_5796 (rho)
Transcription machinery [BR:
amm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMES_5796 (rho)
Messenger RNA biogenesis [BR:
amm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMES_5796 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AFO79332
UniProt:
A0A9R0UBA1
LinkDB
All DBs
Position
complement(6526112..6527173)
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AA seq
353 aa
AA seq
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MSFHGILDLSGKTPFARPGYRPAPDDVAVPLSLVRKHNLRPGDEITGTAEKITSVNGRDP
QEPRPCFADLVPVHPDRRLLLETTPARLLPRVIDLVTPLGRGQRALVVSPPKAGKTTVLQ
EIGHGLSVNHPDCRLLVLLADERPEEVTELSRTVRGEVISSTFDRPPAEHVAVAELAVER
AKRLVEHGEDVVLLLDSLTRLGRAYNLSARPSGRTLSGGVDAAALQPMKRILGAARNIEG
GGSLTIIASALVETGSLADTVFFEELKSTGNAELKLDRKTAERRVFPAVDVAASGTRREE
LLVTPGELAAMREVRRALPGPHAIEQLLEQLRKTGSNAEFLFRVTGAALPEAA
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttcacggaatcctcgacctgtccggcaaaaccccgttcgcccggcccggctac
cggcccgcgcccgacgacgtcgccgtcccgctttccctggtccgcaagcacaacctgcgg
cccggcgacgaaatcaccggcaccgccgagaagatcaccagcgtcaacggccgcgacccg
caagagccgcgcccgtgcttcgccgacctcgtgccggtgcacccggaccgccggctgctg
ctcgaaaccacgccggcgcggctgctgccccgcgtcatcgacctcgtcaccccgctcggc
cgggggcaacgcgctttggtcgtctcgccgccgaaagccgggaaaaccacggtgctgcag
gaaatcggccacgggctgtcggtcaaccacccggactgccggttgctggtcctgctcgcc
gacgaacgtcccgaagaggtcaccgagctgagccgcaccgtgcgcggcgaggtgatctcg
tcgactttcgaccgtccgcctgccgaacacgtggctgtcgcggaactcgccgtcgagcgc
gcgaaacgcttggtggagcacggcgaagacgtcgtcctgctgctcgactcgctgacccgg
ctcggccgcgcgtacaacctttcggcgcgcccgtccggccggacgctctccggcggtgtc
gatgcggccgcgttgcagccgatgaagcggatcctcggcgccgcacggaacatcgagggc
ggcggttcgctcacgatcatcgcgtcggcactggtggagaccggttcgctggccgacacg
gtgttcttcgaggagctgaagagcaccggcaacgccgagctcaagctcgaccgcaagacg
gccgagcggcgcgtcttcccggcggtcgacgtggccgcctccggcacccggcgcgaagaa
ttgctcgtcacccccggcgaactcgccgccatgcgtgaagtccggcgggcgttgccgggc
ccgcacgcgatcgagcagctgctggagcagctgcgcaagaccggctccaacgccgagttc
ctgttccgcgtgacgggtgcggcgctgccggaagcggcctga
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