Ammodytes marinus (lesser sand-eel): 307248742
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Entry
307248742 CDS
T12006
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform 1
KO
K17890
autophagy-related protein 16-1
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm04136
Autophagy - other
ammm04140
Autophagy - animal
ammm04145
Phagocytosis
ammm04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
307248742 (atg16l1)
04140 Autophagy - animal
307248742 (atg16l1)
04136 Autophagy - other
307248742 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
307248742 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ammm04131
]
307248742 (atg16l1)
03029 Mitochondrial biogenesis [BR:
ammm03029
]
307248742 (atg16l1)
Membrane trafficking [BR:
ammm04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
307248742 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
307248742 (atg16l1)
Mitochondrial biogenesis [BR:
ammm03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
307248742 (atg16l1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
ATG16
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_DCAF4
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_RFWD3
CFAP251_N
Beta-prop_NWD2_C
Beta-prop_NOL10_N
Beta-prop_ACSF4
eIF2A
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
PUMA_CC
ADIP
Beta-prop_SPT8
CCDC39
Beta-prop_DCAF12
CEP152_CC1
HALZ
CLIP1
Uso1_p115_C
KASH_CCD
Rab11-FIP3
DUF4200
AP5B1_middle
FKBP15
NET2A
DUF1664
CC_Bre1
HEF_HK
FUSC
DUF2730
Motif
Other DBs
NCBI-GeneID:
307248742
NCBI-ProteinID:
XP_079881357
LinkDB
All DBs
Position
3:35939345..35977907
Genome browser
AA seq
598 aa
AA seq
DB search
MAAGLQSWRKHVSDQLKLRDRVQRQAFEEIIHQYHRLLEKSDLQTVLSERYQPEKYERGH
EQSAGTESGLQQEMSEMRIRHQEELTELHKKRGELAQTVIELNNQIQQKDKEIQSNEAKM
AEFQQQISSLEGDCRELRSSLQDLERANQTLKDEYDALQITFSALEEKLRKTSEDNQELV
SRWMAEKAQEANKLNAENEKDTRRRQAKLQKDLADAAKEPLPVDPEDDIEVLAEEAGNKA
AGETSPNRPLSRTPSKKGSQPPPGLMDSISNIFGRRRTPNSFSSSPDGPEDQSAVCADVR
VPATALHVFDAHDGEVNAVRFSPGSRLLATGGMDRRVKLWEVVNGRCEPKGALTGSNAGI
TSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLAARFLLDNARIVSGSYD
RTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRAESIVQELELLG
RVTSLDLNHDRTELLSCSRDDLLKIIDLRTNAVRQAFSADGFKCGADWTRVTFSPDGSYV
AAGSADGALYVWNVLTGKLDRTLDRNHHSAINAVCWSPSGTYVASVEKGCKAILWSDM
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggccgccggtctgcagtcctggaggaaacacgtctcagaccagctgaagctcagagac
agagtccagagacaagccttcgaggagatcatccaccaataccatcggctgctggagaag
tcggacctgcagacggttctgtctgaacgctaccagccggagaaatatgagagaggccac
gagcagagcgcgggcacagagtccggtctgcagcaggagatgtctgagatgaggatcaga
catcaggaggaactgacagagctgcacaagaagagaggagagctcgctcagactgtgatc
gaactcaacaaccagatccaacaaaaagacaaggagatccagagcaacgaggccaagatg
gctgagttccagcagcagatctcatcgttagaaggcgactgtcgggagctgaggagcagt
ttgcaggaccttgagcgtgctaaccagaccctgaaggatgagtatgatgctcttcagatc
accttctccgctctggaggagaagctccggaagacttcagaggacaaccaggagctagtg
tcacgctggatggcagagaaagcccaggaggccaacaagctgaacgcagagaacgagaag
gacacacggcggcgtcaggccaagctgcagaaggatctcgctgatgcagccaaggagcca
ctgcctgtagaccctgaggatgacatcgaggttttggcagaagaagcaggaaataaagcc
gcaggagagacgtctcctaacagaccgctgagccggacgccaagtaagaaaggctcccag
cctcctcctggtctgatggactcaatctccaacatctttggcaggcgtcggactcctaac
tccttcagctcgtcccctgatggacctgaagaccagagcgcagtgtgtgccgacgtccgg
gtccccgccacggccctacacgtgtttgacgctcacgatggcgaggtaaacgcagtgagg
ttcagcccggggtctcgtctcctagcaacaggagggatggaccgcagagtcaagctgtgg
gaggtcgtcaacggtcgttgtgaacctaaaggagcgctgaccggcagcaacgctggaatc
accagcatcgagtttgacagcgcaggctcgtacctcctcgctgcctccaatgacttcgcc
agtcgcatctggacggtggacgactacagactcaggcacaccctgacaggccacagtggg
aaggtgttggccgctcgcttcctattggacaacgctcgcatcgtatcaggaagttatgac
cggacgctgaaactctgggacctgcgctccaaagtctgcatgaagacggtgttcgccggc
tccagctgtaacgacatcgtgtgcacggagcagtgtgtgatgagcggacactttgacaag
aagatccgcttctgggacatcagagcagagtccatagtgcaggagctggagttgttgggc
agagtgacgtctttagatctgaaccacgaccgcacggagctgctgagctgctccagggat
gacctgctcaagatcatcgacctgcggaccaacgcagtgagacaggctttcagtgctgat
ggttttaagtgtggagcagattggaccagagtaactttcagtcctgatggcagctatgtt
gctgccggctcggctgatggagcgctgtacgtctggaacgttctcactggaaaactggac
cgaaccctggaccgcaaccaccactctgcgatcaacgccgtctgctggtcgccgtcggga
acctacgtggcgtctgtggagaaaggctgcaaggccattctctggtcggacatgtag
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