KEGG   Ammodytes marinus (lesser sand-eel): 307249320
Entry
307249320         CDS       T12006                                 
Symbol
sec13
Name
(RefSeq) protein SEC13 homolog
  KO
K14004  protein transport protein SEC13
Organism
ammm  Ammodytes marinus (lesser sand-eel)
Pathway
ammm03013  Nucleocytoplasmic transport
ammm04141  Protein processing in endoplasmic reticulum
ammm04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:ammm00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    307249320 (sec13)
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    307249320 (sec13)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    307249320 (sec13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ammm03019]
    307249320 (sec13)
   04131 Membrane trafficking [BR:ammm04131]
    307249320 (sec13)
Messenger RNA biogenesis [BR:ammm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     307249320 (sec13)
Membrane trafficking [BR:ammm04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    307249320 (sec13)
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    307249320 (sec13)
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    307249320 (sec13)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Gbeta EIF3I Beta-prop_RIG_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_NOL10_N Beta-prop_WDR41 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd NBCH_WD40
Other DBs
NCBI-GeneID: 307249320
NCBI-ProteinID: XP_079882107
LinkDB
Position
4:complement(2190160..2196835)
AA seq 320 aa
MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRTVKIFDVRNGGQILVADLRGHEGPV
WQVAWSHPMFGNILASCSYDRKVIIWKEENGSWDKMHEYTGHESSVNSVCWGPHEFGLIL
ACGSSDGAISLLTFTGDQQWDVKKISNAHTIGCNAVSWAPAVVPGSLIDQPTGQKPNYVK
RFVSGGCDNLVKLWKEEDGQWKEDQKLEAHSDWVRDVGWAPSIGLPTSTIASCSQDGRVF
IWTCDDPAGNTWTAKLLHKFHDVVWHVSWSITGNILAVSGGDNKVTLWKESMDGQWACIS
DVSKGQGAVSTITDTQQTEQ
NT seq 963 nt   +upstreamnt  +downstreamnt
atggtttccgttatcaacacggtggacacctcccacgaggacatgatccacgatgcccag
atggattactacggcactcgactggccacctgctcgtccgatcgcaccgtcaagatcttt
gacgtgagaaacggaggacagattctagtggccgacctcagagggcacgagggtcccgtg
tggcaggtggcctggtctcacccgatgttcggcaacattttggcttcgtgttcgtacgac
cggaaagttataatctggaaggaagagaacgggtcctgggacaagatgcacgaatacacc
ggacacgagtcctcagtgaactcagtgtgctggggtccccatgaatttggtctgattctg
gcctgtggcagttcagacggagccatttctctgctcacattcaccggtgatcaacagtgg
gacgtcaagaagatcagcaacgcacacactatcggctgtaatgcagtcagttgggcgccg
gctgttgttcccgggagtttgatcgaccagccgaccggacagaaaccaaactacgtcaaa
cgcttcgtctccggaggctgcgacaatctggtcaaactctggaaagaggaggatgggcag
tggaaggaggaccagaagctggaggctcactctgactgggtcagagacgtcggctgggct
ccgtccatcggtctgcccaccagcaccatcgccagctgctctcaggacgggcgtgtgttc
atctggacgtgtgacgatccagcaggaaacacctggacggccaaactgctccacaagttc
cacgatgtcgtttggcacgtcagctggtccatcaccggcaacatactggctgtttctgga
ggagacaataaggtgacgctgtggaaggagtctatggacggtcagtgggcgtgtatcagc
gacgtcagcaaaggacagggcgccgtctccaccatcacagacacacaacagaccgagcag
tga

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