Ammodytes marinus (lesser sand-eel): 307249470 Help Entry 307249470         CDS       T12006                                  Symbol col2a1b Name (RefSeq) collagen, type II, alpha 1b   KO K19719   collagen type II alpha Organism ammm  Ammodytes marinus (lesser sand-eel) Pathway ammm04510   Focal adhesion ammm04512   ECM-receptor interaction ammm04518   Integrin signaling Brite KEGG Orthology (KO) [BR:ammm00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     307249470 (col2a1b)    04518 Integrin signaling     307249470 (col2a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     307249470 (col2a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ammm00536]     307249470 (col2a1b) Glycosaminoglycan binding proteins [BR:ammm00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    307249470 (col2a1b) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  307249470 NCBI-ProteinID:  XP_079882322 LinkDB All DBs Position 4:complement(6444698..6495214) Genome browser AA seq 1490 aa AA seqDB search MFNIMDSRTVLLLVATQACLLAVVRCQESDQEDVLSCLQDDQRYSDKDVWKPEPCRICVC DTGTVLCDVIVCEDLKDCPNPEIPFGECCPICTADPSPPIGATGAKGQKGEPGDITDVVG PRGSSGPMGPPGEQGNRGSRGDKGEKGTLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGQSG PGGPRGPPGPSGKPGDDGEAGKSGKSGERGPSGPQGSRGFPGTPGLPGIKGHRGYSGLDG AKGETGSVGSKGESGAGGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLSGPAGPPG PVGPSGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIGG SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGLAGFKGDAGPKGELGPAG LQGALGPTGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPSG AGGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGAQGKVGPSGGSGEDGRPGPPGPQGARG QPGVMGFPGPKGATGDGGKPGEKGLGGANGLRGLPGKDGETGSAGPPGPAGPAGERGEQG QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQG PRGLPGTPGTDGPKGAIGPAGGAGSQGPPGLQGMPGERGSSGISGPKGDRGDLGEKGPEG APGKDGGRGLTGPIGPPGPGGPNGEKGESGPSGPSGAPGTRGAPGDRGEGGPPGPAGFAG PPGSDGQPGTKGEMGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG FPGSAGRVGPPGANGNPGPAGPAGSPGKDGPKGVRGDGGPPGRQGDAGLRGPSGTPGEKG DAGEDGPPGPLGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGGSGGPGDRG PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGNKGERGNTGAIGAAGAPGAPGAGG PVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGEGGEGGERGQKGHRGFTG LQGLPGPPGQSGDQGATGPAGPSGQRGPPGPMGPAGKDGSNGLPGPIGPPGPRGRSGESG PAGPPGNNGPPGPPGPPGPGIDMSAFAGLGQTEKSHDPLRYMRADQASGNLRQHDAEVDA TLKNLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVHCNM ETGESCVMPKPSGIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAANTAAIQMTF LRLLSTEAAQSLTYHCKNSVAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG CTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcaacattatggattcgaggactgtactgctacttgtagcaacccaagcctgtcta ttagccgttgtgagatgtcaagagagcgaccaggaggatgttttaagctgtttacaagat gaccagcgctatagcgacaaggacgtatggaaacccgagccttgtcgcatctgtgtgtgt gacaccgggaccgtcctgtgtgatgtaattgtctgcgaggatcttaaagactgccccaac cctgaaatcccattcggagagtgttgccccatctgcacagccgacccgtctccacccatt ggagcaactggagctaagggtcagaaaggcgaacccggagatattaccgatgttgtagga ccaagaggatcatctggaccaatgggcccgccaggagagcagggaaaccgaggatcaaga ggagataagggagagaagggaactctcggtccccgtggcagagatggtgagcccggcacc cccggaaaccccggcccccctggacctcctggacctaacggaccccctggcctcggcggg aactttgctgctcagatggccggtggtttcgacgagaagtctggcggcgcgcagatgggt gtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggcccgtccggagca cctggcccacaaggtttccagggcaacccaggagaggcaggagagcccggacaatctggc ccagggggtccccgtggcccacccggaccttctggaaaacctggagatgatggtgaagcc ggcaaatctggcaaatcaggcgagcgtggaccttctggacctcagggatctcgtggattc ccaggaactcctggcctgcccgggatcaagggacacagaggttactccggtcttgatggc gcaaagggagagactggatctgttggctctaagggtgagtctggtgctggtggagagaac ggcgctcccggacccatgggaccccgcgggctgcccggtgagagaggacgtcccggagcc agtggatcagctggagcacgtggtaatgatggtttgtccggccccgctggtcccccaggc cccgtcggtccctctggagctcccggcttccctggctctcctggcacaaagggagaagct ggtcctaccggagcccgcggacctgagggtgctcagggacctcgtggagagtctggcact cctggatcatctggaccttcaggagcttctggaaaccctggaactgatggtatcggcgga tccaaaggatcagctggtgcccctggtatcgctggtgctcctggtttccctggccctcgt ggacctcccgggcctcagggcgctactggacctctcgggcccaaaggaacatctggagac cccggtctcgcagggttcaagggtgatgctggacccaaaggagaacttggccccgctggt ctgcagggagccctgggcccgacaggagaagagggaaagagaggacccagaggtgagcct ggtgctgccggaccactcggacctcccggagagagaggatcccccggtaaccgcggtttc cctggtcaagatggtctggctggtcccaagggcgcccctggtgagcgtgggccttccggt gccggtggacccaaaggtgccggtggtgaccctggccgtcccggagagcctggtctgcct ggtgccagaggcctgaccggtcgccctggtgatgccggtgctcaaggcaaagttggacct tccggaggttcaggagaggacggtcgccccggaccccccggccctcagggagccagaggt cagcctggagtcatgggattccccggacctaagggagcaactggagatggcggcaagcct ggagagaaaggactgggaggagctaacggactgagaggtctgcctggcaaagatggagag accggctcagctggaccccccggccctgctggccccgccggagagagaggagagcaagga cagcccgggccctcaggattccaaggtctacctggacctcctgggcccccgggtgaggga ggcaagcccggagacatgggagttcctggagagggaggagctgctggtgccactggaccc agaggagagcgtggtttccccggagagagaggcgcggctggatcccagggtctgcagggc ccccgaggtctgcctggaacccccggaaccgacggacccaagggagctattggacccgcc ggcggtgctggttctcagggcccccccggcctgcagggtatgcccggagagagaggatcc tctggcatctctggtcctaagggagacagaggtgacctcggagagaaaggacctgaaggc gcccctggcaaagatggcggcagaggtctcactggtcccatcggtcctcccggtcccggt ggtcccaacggcgagaagggtgaatctggtccttctggtccttctggtgctcccggaacc cgcggtgctcctggtgacaggggagagggaggacctcctggcccagctggatttgctgga ccccctggatctgacggtcagcctggaaccaagggagagatgggagagtctggacagaag ggtgacgctggtgcccccggaccccagggaccctctggagccccaggacctgcgggtcct actggtgtgtttggacctaaaggtgcccgtggcgctcagggacctcctggtgccactggt ttccccggatcagctggccgagtcgggcctcccggtgccaatggtaaccctggccccgct ggccctgctggatctcctggtaaagatggacctaagggtgtgaggggcgacggtggcccc ccaggcagacagggagacgctgggctcaggggcccttcagggacccctggagagaaggga gacgctggagaggatggtccccctggtcccctcggtccctcaggtccctctggtctggcc ggtcagcgtggtatcgttggtctgcctggacagcgcggagagagaggcttccctggtctg cctggaccttctggtgagcccggtaagcagggaggttctggtggccccggagaccgcgga ccccccggacctgtcggaccacctggactcaccggacctgcaggagagcctggaagagag ggcaacgccggatctgatggacctcctggtagagatggagctactggaaacaagggtgaa cgtggaaacaccggagccatcggtgctgccggcgctcctggcgctcccggtgccggcggc ccagtcggtcccaccggcaaacagggagacagaggagagtctggcgcacagggaccatct ggacctcccggacctgctggagccagaggaatgcctggaccccaaggcccccgtggagac aagggtgagggcggagagggcggcgagcgaggacagaagggacaccgaggcttcaccggt ctgcagggtctgcccggacctccgggtcaatctggagaccagggtgctactggacctgct ggaccttctggacaaagaggaccccctggacctatgggcccagctggaaaggacggttcc aacggtctgccaggacccatcggaccccccggacctcgtggtcgcagtggagagtccggt cctgctggtccccccggaaacaatggcccccccggtcctcccggtccccccggccctggc attgacatgtctgccttcgccggtctgggtcagacagaaaagtcccatgatcctttacgg tacatgagagccgaccaggcctccggaaatctgcgccagcacgacgcggaggtcgatgcc acgctcaagaacctcaacaaccagatcgagaacatccgcagtccagagggatccaagaag aacccagctcgcacctgcagagacctcaagctctgccatccagactggaagagcggagag tactggattgatcctaaccagggctgcaccatcgatgccatcaaggtccactgcaacatg gagaccggagagtcctgtgtgatgcccaagccttcaggcatcccacgcaagaactggtgg tccagcaagagcaaggaccgcaagcacgtctggttcggagagacaatgaatggaggattc cacttcagctatggtgatgatagcctggcagccaacaccgcggccatccagatgaccttc ctgaggctgctgtccaccgaggcggcccagagcctcacctaccactgtaagaacagcgtg gcctacatggacgcctcggccggcaacctgaagaaggccgtgctgctgcagggctccaac gacgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaggacggc tgcacgaaacacacgggacaatggggcaagacagtgatcgaatacagatcgcagaagacc tctcgcctgcccatcgtagacattgcccccatggatatcggcggagcagaccaggagttc ggagttgacgtcgggccagtctgcttcttgtaa

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