Ammodytes marinus (lesser sand-eel): 307254222
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Entry
307254222 CDS
T12006
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm03018
RNA degradation
ammm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307254222 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
307254222 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ammm03019
]
307254222 (lsm4)
03041 Spliceosome [BR:
ammm03041
]
307254222 (lsm4)
Messenger RNA biogenesis [BR:
ammm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
307254222 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
307254222 (lsm4)
Spliceosome [BR:
ammm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
307254222 (lsm4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
307254222
NCBI-ProteinID:
XP_079888640
LinkDB
All DBs
Position
8:complement(11476053..11479739)
Genome browser
AA seq
153 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWKMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGRGGGRGGGGRGLFGGRGRGM
TGPGRGQMQQQQQQQQQQPDKKLGKPQGMKNQH
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctctctgctgaagactgcccagaaccaccctatgctggtggagctgaag
aatggagagacatacaacggtcacctggtcagctgtgacaactggatgaacatcaacctg
agagaagtcatctgcacctccagggacggagataagttctggaagatgcccgagtgctac
atccgaggaagcaccatcaaatatctgcgaatccccgatgagatcatcgacatggtgaag
gaggaagtggtgtccaagggccgcgggcgtggaggcatgcagcagaacaaacagcagggc
agaggaggcggaagaggaggaggcggccgaggtctgtttggcggccgtggcagaggaatg
accggccctggtcgtggacagatgcagcagcagcagcaacaacagcagcagcagccggat
aagaaacttggcaaacctcagggaatgaagaaccagcactga
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integrated database retrieval system
