Ammodytes marinus (lesser sand-eel): 307255006
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Entry
307255006 CDS
T12006
Symbol
LOC307255006
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm03013
Nucleocytoplasmic transport
ammm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
307255006 (LOC307255006)
03015 mRNA surveillance pathway
307255006 (LOC307255006)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ammm03019
]
307255006 (LOC307255006)
Enzymes [BR:
ammm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
307255006 (LOC307255006)
5.6.2.5 RNA 5'-3' helicase
307255006 (LOC307255006)
Messenger RNA biogenesis [BR:
ammm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
307255006 (LOC307255006)
mRNA cycle factors
Common to processing body (P body) and stress granule
307255006 (LOC307255006)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
307255006
NCBI-ProteinID:
XP_079889727
LinkDB
All DBs
Position
9:18885372..18900928
Genome browser
AA seq
1107 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEGELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPMLKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLGPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTSGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSTNGRTSNMYFQTHDQIGMIGTGHSPLTSMNL
PIPFNLVMPPIPPPSYMGQVNGPTTGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHGGA
DRHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDEFKSQI
DVALSQDSTYQGERAYQHGGVTGVSQY
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagactctaacgtttctcgacacggaggaa
ggcgagttgctgggagcggacacccagggctccgagtatgacttcaccgacttcaccctg
ccgagtcaaacccagacccaaggccagacacagagtcagctggacagccaggttaatggc
cctgacggcgtgctacagaatggagatgaccccatgttgaaggccagtcagctgctggca
gagttgaactttgaggaggatgaggaggacacatactacaccaaggatcttccattacat
gcttgcagttactgtgggattcacgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgtaatggccgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggtcctctgggggaaacagtgctg
gagtgctacaactgtggctgtcgcaacgtcttcctgctgggcttcatccctgccaaagct
gactcggtagtggtgttactctgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcccagtggcagcctctcatccaggaccgctgcttcctgtcctgg
cttgtgaaaatcccttcagagcaggagcagctcagagctcgtcagatcaccgctcagcag
atcaacaagctggaggagctctggaaggacaatccaacggccaccttggaagacctggag
aaacctggtgtggacgaggagccccaacatgttctgctccgatacgaggacgcctaccag
taccagaatatctttggtcctcttgtaaagctggaggctgactatgacaagaaactcaaa
gagtcccagacacaagacaatattacagtcagatgggacttgggcctgaacaaaaagagg
attgcttatttcactattccaaagacagactcagacatgcgactgatgcagggagatgag
atttgcctgaggtacaaaggagacctaggccctccatggaaaggcattgggcatgtcatc
aaagtccctgataactatggtgatgagattgccatagagctaaggagcagtgccggagct
ccagtggagatcccgcacaactttcaggtcgactttgtgtggaagtctacttcttttgac
agaatgcagagtgccctgaagacatttgctgtggatgagacttcagtatctggttacatc
taccacaaactgctgggacatgaggtagaggatgtggtcatcaagtgccagctgcccaaa
cgcttcactgctcaaggcctgcctgacctaaaccactctcaggtgtatgctgtgaagacg
gtgctgcagcgccccctcagcctgatccagggtcctcctggcacagggaagaccgtcacc
tctgcgacggtcgtctaccacctggccagacagggcaatgggcctgtgctggtgtgtgct
cccagtaacattgctgtggaccagctgactgagaagatccaccagactgggctgaaggtg
gtgaggctctgtgccaagagcagggaggccatcgactcgcctgtgtccttcctggctctg
cacaaccagacccggaacatggacagtatgccagaacttcagaagctccaacagctgaag
gacgagactggagagctgtcatcctcagatgagaagcgctacagagctctgaggcgcacg
gctgagagggagctgcttatgaatgccgatgtgatctgctgtacgtgtgttggtgccggg
gatcctcgtctggccaagatgcagttccgctctatcctgattgatgagagcacccaggcc
actgaaccagagtgcatggtgcctgttgtcctaggagccaaacagttgattctggtgggt
gatcactgccagctgggtcctgtagtgatgtgtaagaaggcagctaaagccggtctgtcc
cagtccctgtttgagcgtctggtggttttggggatccgaccaatccgtctgcaggtgcag
taccgcatgcacccggccctaagcgccttcccctcaaacatattctatgagggctcactg
cagaacggagtcactgccgcggatcgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaagcccatgtttttttacgtcacctcaggccaagaggaaatcgcaagctctgga
acatcctatcttaacaggactgaggcatccaatgtggagaaaataaccacaaggttactg
aaagctggagctaaacccgatcagattggcatcataacaccgtacgaggggcagaggtcc
tacctggtccagtacatgcagttcagtggctccctccataccaaactctaccaggaggtt
gaaatagccagtgtggacgcctttcaaggcagagagaaggacttcattatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaacgatcccaggcgtctgaatgtg
gcactcactagggccaggtatggtgtgatcattgtgggaaaccccaaggccctgtccaag
cagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggtggaaggc
cctctcaacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaac
accatcaaccctggggggcgcttcatgagcacagccatgtatgatgccagggaggccctt
attcctggatctgtgtatgatcgcagcactaatgggcgtacttccaatatgtatttccag
acccatgaccagattggtatgattggcacaggccacagtcccctgacttcaatgaacctc
cccatcccattcaacctggtgatgccccccattcctcctcctagttacatgggacaggtc
aacggacccaccactggacgtggcggaggtatgaaaggcaaagcagggagcggaggaggc
ggtgggacccgaggtggtcgtcaaagaaaccgtggcaacatggggaaccacggcggagca
gaccgccacatgagtgggagccaggccagccaggacctgggctcccagcccttctcccag
gggcccctgacgcagggctacatcaacatgagccagccgtcacagatgagccagccgggg
ctctcccagcctgaactctcacaggacagttacctaggagacgagttcaagtcccagatt
gatgtggctttgtcccaggactccacctaccagggagagcgggcctaccaacacggtggt
gtgactggagtgtcccagtactag
DBGET
integrated database retrieval system
