Ammodytes marinus (lesser sand-eel): 307256274
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Entry
307256274 CDS
T12006
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm03008
Ribosome biogenesis in eukaryotes
ammm03013
Nucleocytoplasmic transport
ammm03015
mRNA surveillance pathway
ammm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
307256274 (nxf1a)
03015 mRNA surveillance pathway
307256274 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
307256274 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
307256274 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ammm03019
]
307256274 (nxf1a)
03009 Ribosome biogenesis [BR:
ammm03009
]
307256274 (nxf1a)
Messenger RNA biogenesis [BR:
ammm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
307256274 (nxf1a)
mRNA cycle factors
Stress granule specific factors
307256274 (nxf1a)
Ribosome biogenesis [BR:
ammm03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
307256274 (nxf1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_NXF2
LRR_4
LRR_8
UBA_8
LRR_9
LRR_SKP2
RRM_NXF1-2
DUF8346
Citrulline_exp
Motif
Other DBs
NCBI-GeneID:
307256274
NCBI-ProteinID:
XP_079891310
LinkDB
All DBs
Position
10:14063796..14081553
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AA seq
636 aa
AA seq
DB search
MADGGHYYNEHDDRTAPQFRNGKGRRGGGGNKGRSYDRSRRDRQRGGGFGGPGPRSRLDD
PDGDVTMSDNSQDSSSQNRYTPYGRPFRKGGDVRFDRDRRQGRGGGGGRGGGGGGFRGGD
RGGGGSGGGKNRSGWYKITVPHGRKYDKKWLLTALTNICSVPFKPEQYHVDHNRVHFYVD
ESSVANALHKCSHKITDTDGYKVEVHVNPCAPPSFLLDLKPEQLEHLKQCMAKRFDGSQQ
ALDLNNIRTDPDLVSHNIEVILNRKTIMESVIKIIEENIPELTSLNLSNNRMHKLDDLSE
LVTKVPNLKTLNLSHNELKSDRELDKVKGLKLVELCLNRNPLCDFFKDQPSYISAVRQRF
PRLLKLDGHDLPPPIVFDVETPTTIPTCKGSCFGSDEIKALILRFLQQYYSIYDSGNRQP
LLDAYHDGASLSLTTPYSTQNPSRSSLGEYHKDSRNLKRIKDTTSRFKLLKHTRLNVVAF
LNELPKTQHDIASFNVDVNTYTNTLLSFTVTGVFKEVAVDGKSRESTMAFSRVFITVPAG
TTGLCIVNDQIFIRMATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSVKSGMNLE
WSQKCLQDMDWDFNRAAQVFTQLKAEGKIPDVAFIK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggcgggcactactacaacgagcatgatgacagaaccgcaccacagtttcgc
aacggtaaaggcaggcgaggaggaggtggcaacaagggtcggtcttatgacaggtcccgc
agagaccgacaacggggaggtggctttggagggcctggaccacggtctaggcttgatgac
cctgatggagatgtaactatgagtgacaactcccaggacagcagctcccagaacagatac
accccatatgggagaccttttcggaaaggaggagacgtacgctttgacagagaccgaaga
caaggcagagggggaggaggtggtagaggaggtggtggcggtggctttagaggaggagac
agaggtggaggaggcagtggaggagggaagaaccggtcgggctggtacaaaattacggta
ccacatggcagaaaatatgacaaaaaatggttactgacagctcttacgaacatctgttct
gttcccttcaaacctgaacagtaccatgttgaccataacagggtccatttttatgtggat
gagtcgtctgttgcaaatgctttgcacaaatgctctcacaagatcactgacacagatggt
tacaaggtggaagtgcacgtcaacccttgcgctccaccatccttcctccttgatctgaag
ccagaacagttggagcacctgaagcaatgcatggcaaaacgttttgatggctcccagcaa
gcgctggacttaaacaacatccgaacagacccagacctggtatcccataacattgaagtc
atcctgaatcggaaaacaatcatggaatccgtcatcaagatcattgaagaaaacattcca
gagctgacaagcttgaacctgagtaacaaccgtatgcacaaactggacgatctctctgaa
ttggttacaaaggttccaaatctgaagacactcaacctttcccacaatgagctgaagtca
gaccgggagctggacaaggtgaagggcctgaagctggtggagctgtgcctcaacagaaac
cctctgtgtgacttcttcaaagaccagccctcgtacatcagtgctgtgcggcagaggttt
ccccggcttctcaaactggatggtcatgacctccccccacccattgtattcgatgtggag
acgcccaccactatccccacctgcaagggcagctgttttggctctgatgaaatcaaggct
ctcatccttcggttcttgcaacagtactacagtatatacgactctgggaacagacagcca
ctcttggatgcttatcatgatggagcatcattatctctcacaacaccctactccacccaa
aacccctctaggagcagtctgggagaataccataaagacagtagaaacctgaagaggatc
aaagacaccacgagcaggtttaaacttctgaagcacacacgactgaacgtggtggctttc
ctcaacgagttacccaaaactcagcatgacatcgcctccttcaatgtcgacgtaaacacc
tacacgaacacacttctatcattcacagtcactggggtcttcaaagaagttgctgtagat
ggtaaatcacgagagtccaccatggccttctctcgagttttcatcacagtccctgctggg
accaccggtttgtgcatcgtgaacgaccagattttcatccgaatggccacaacagaggag
atccgccgagcttttgttgctcccgccccgactccatcttccagccccgtgcccaccctc
actgcaccgcagcaggagatgctcacagccttctcagtgaagtctggcatgaacctggaa
tggtcccagaagtgtctgcaagacatggattgggatttcaacagagcggcacaagttttt
actcagttaaaggcggaaggaaagatccctgacgttgcgtttattaaatga
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