Ammodytes marinus (lesser sand-eel): 307260795
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Entry
307260795 CDS
T12006
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
ammm Ammodytes marinus (lesser sand-eel)
Pathway
ammm03013
Nucleocytoplasmic transport
ammm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ammm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
307260795 (thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
307260795 (thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ammm03019
]
307260795 (thoc2)
03041 Spliceosome [BR:
ammm03041
]
307260795 (thoc2)
Messenger RNA biogenesis [BR:
ammm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
307260795 (thoc2)
Spliceosome [BR:
ammm03041
]
Complex C
Other components
EJC/TREX
307260795 (thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
307260795 (thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
307260795
NCBI-ProteinID:
XP_079897238
LinkDB
All DBs
Position
14:complement(18980426..19003461)
Genome browser
AA seq
1569 aa
AA seq
DB search
MATLILPGEWFKNWEKSGKHEFVQLCKELTEKTDHGSEIRDIQSALYELCWQVVQGNLKL
DLVASVLGDMMEFRDDMPSILADVFSILDLETSALEEKNKRDHYTQLVGACLYFVPDAIM
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGSITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPQDAAILEEHKQSVSE
AKQIARKLVMVVLPSEKNEDKEKEKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWHHAQC
IMDQMPSFYCTSHKAIALALCQLVHLTVEPLYRRAGLPKGAKGCVHHPLRSKRAPRPAES
FEDLRRDIFSMLGYLGPHLSHDAILFAKIVRLGKAFMKEYQSSDGREDVKDKMETLLSCF
LSIADQVLLPSLSLMECNACMSEEMWGLFKLFPYRHRYRLYGQWKNETYSSHPLLVKVKA
HTIERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKY
LTSLNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQY
VTNQLKAGKSFDLLILKEVVQKMAGIEITDEMTLEQLEAMTGGEQLKAEGGYFGQIRNTK
KSSQRLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGF
LASNLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKSEKGNRQQ
QKVHKYVAACEQVMTPVHTAVVSLHPARVWDDLRPQFYATFWSLTMYDLAVPHAAYEREV
NKLKVQIKAIEENSEIPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNW
LLAKSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSA
IIYTVASCTENESHRYGRFLCCMLETVTRWHSDRAIYEKECVNYPGFLTIFRATGFDGGN
KADQLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQA
LECRVHKICLEEKDKRPDLYALAMGYSGRLKGHKVHMVPENEFHHKEQPARSATPASQQN
GPGSTGKPATSTSTSKTEEGTSEDGERGKDKSQGTTKPVNKTNSAAAKVTSSNGNGALNS
TKAVKERDDKEKSGKEKKEKKDKTPGSTPETKAENRREKQRDERPGKEERAAREGKEKTP
KADREKAKAEEKSSKDDKAKAGNGEPAEPSRERDAVKDSKSKEKGERGAVAGTLKSPVPR
SESAESERDHKRRKLDSHSSPSHSSSVKDNNNEPKETTSKHHVTYNSVARSKSRERETEK
KDSDNTQGRSKEKKEEKDRKERKRDHAVNDREASQETKRKKDENGTNSSKNSRSTSPSCD
SPLSAEKEKSKRPKSSSKEKADAVKPERTSSGGKKESRHDKEKSEKKEKRDASGGKEEKK
HHKSSDKHR
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacttatcctccctggtgaatggttcaaaaactgggaaaaatcaggaaaacac
gagttcgtacaactctgtaaagagcttacagagaaaacagatcatggaagtgagattaga
gatatacagtccgccttatacgagctctgctggcaagttgtacaggggaacctgaagttg
gatcttgtcgccagcgtccttggggacatgatggaattccgagatgacatgccatcgatt
ttagcagatgtgttcagcatattagatttagagacaagtgcactggaagaaaaaaacaaa
cgtgaccattacacacaactggtgggagcatgtttgtattttgttccagacgccatcatg
aaagagaggctggatccagaaacccttgaatctcttggacttataaaacaagcccatcag
ttcaatcagaagattgttaaaatcaagactaaactattttacaagcaacagaagttcaac
ttgctaagggaggagaacgagggctatgctaaactaatcacagagctcggccaagacctc
tcaggcagcatcaccagccaccttgtcctggagagcatcaagtccctcataggatgtttc
aacttggacccaaatcgtgttctggacataatcctggaggtgtacgagagtcgatctgac
caggatgagttcttcctgtcgctcatcaagtcctacatgtgtgagccactcaccctctgc
cacatcctgggcttcaagtttaaattctaccaggagcccaatgaggaaacgcccaagtca
ctttaccacattgctgctgctctgcttcaccataacctgatagagctggaagatctctac
gtacatcttatgccacaggatgccgccattttagaggaacacaaacaaagtgtctcggag
gccaagcagattgcccgcaagctggtcatggtagtgttgccctcagagaaaaatgaagac
aaagagaaggagaaggagaaagagaaggaggaagagaagaatgagaagccaccagataac
cagaagcttggtcttttggaagcgctgcttagaattggagactggcaccacgcccagtgt
attatggaccagatgccttctttctattgtacttctcacaaggccatcgcactggcactc
tgccagcttgtacacctgactgttgagcctctttatagaagggccggcctcccaaaaggg
gcaaagggatgtgtgcatcatccactgaggagcaagcgggcccctcggcctgcagagagc
tttgaggaccttcgcagggacatattcagcatgctgggctacctgggccctcacctctcc
catgacgctatcctcttcgccaagattgttcgtctgggcaaggccttcatgaaagagtac
caaagtagtgatggcagagaggatgtcaaagacaaaatggaaacactactgagttgtttc
ctgagcattgcagaccaggtgctactcccttctctctccctgatggagtgtaatgcttgc
atgtctgaggaaatgtggggtctcttcaaactctttccctaccggcacaggtacaggtta
tatggacaatggaagaatgagacatattccagccatccactgttggttaaagtcaaagct
cacaccatcgaaagggccaaatacattatgaagcggttgaccaaagagaatgtgaaacaa
tctggaaggcagattggcaaactgagccatagcaatcccaccatcctctttgattatatg
ctgtctcagatccaatggtacgacaatctcatcgttccagtggtggactccttgaaatac
ctcacatccctcaactatgacgtcttggcctattgcatcatcgaggctctggccaatccc
gagaaggagaagatgaagcatgacgacaccaccatctcctcatggcttcagagcctggca
agtctgtgtggagccgtttttagaaaatacccaattgagttggctggtcttcttcagtat
gtcaccaatcagcttaaagccgggaagagttttgacctgttgattctgaaagaggtggtg
cagaaaatggctggcattgagatcacagatgagatgaccttagagcagttggaggccatg
accggaggagagcaactcaaagctgagggtggctactttggccagatcaggaacactaag
aagtcatcacagcgtctgaaggacgcgctgctcgaccacgacttggccttgccactgtgt
ttactcatggcccagcaacgaaatggtgtggtcttcttagagggtggagagaaacatctc
aaacttgtcggccatctttatgatcagtgtcatgatacgttggtgcagtttggtggcttt
ctggcctccaaccttagcacagaagactacatcaaacgggttccctccattgacattctc
tgtaaccagttccacactccacatgatgctgccttcttcctgtctcggccaatgtacgcc
caccagattttgtctaagtacgacgagctgaagaagtcggagaaaggcaaccggcagcag
cagaaggtgcacaagtatgtggcggcctgtgaacaagtgatgacaccggtgcacacggct
gtggtgtccctgcatccggccagggtctgggacgacctgcgccctcagttctacgccacc
ttctggtccctcaccatgtacgacctggccgttccacatgctgcctacgagcgcgaggtc
aacaagctcaaggtccagatcaaggccatcgaggagaactcagaaatacccatgaataag
aagaagaaggaaaaggaacgctgcaccgccctgcaggagaaactgcaggaggaggagaag
aagcagctggagcacgtccaaagggttttacaccgccttaaactggagaaagacaactgg
ttgttggccaaatccactaagaacgagaccataacaaagttcctgcagctctgtctgttc
ccccggtgcatcttctcctccatcgacgcggtgtactgcgcccgctttgtggagctggtc
caccagcagaagacacccaacttctgcaccctgctgtgctacgacagggtgttctctgcc
atcatttacactgtggccagctgtacggagaacgagtctcatcgctacggacgcttcctc
tgctgcatgctggagactgtgacccgttggcacagcgaccgtgcaatctacgagaaggag
tgtgtcaattaccccggcttcctaactatcttcagagccacaggcttcgatggagggaac
aaagcagatcaactagattatgagaacttcaggcatgtggtgcacaaatggcactacatg
cttactaaagcttcagttcactgcctggagacaggagattacacacacatccggaatatt
ctcattgtgctcaccaagatcctgccctgctaccccaaggtcctgaacctgggacaggcg
ttggagtgccgtgtccacaagatctgcctggaagagaaggacaagaggccagacctctat
gccttagcaatgggttattcaggtcggttgaaaggccacaaggtgcacatggtccctgag
aatgagtttcaccacaaggagcagccagcacgcagtgccacccctgccagtcaacagaat
ggacccggcagcactggcaagcctgccaccagcacaagcacaagcaagactgaggagggg
acgtcagaggatggtgaacggggcaaggataaatctcaggggacaacgaagccagtgaac
aaaaccaacagtgcagcagccaaagtgacctccagcaacgggaacggtgccctcaacagc
accaaagccgttaaagaacgggacgacaaagaaaagagcgggaaggagaaaaaagagaaa
aaggacaagacaccaggcagcactccagagaccaaggcagagaaccggcgggagaagcag
agagacgagaggccggggaaggaggagcgggcggcacgtgagggtaaggagaagacgccc
aaggcagacagggagaaagccaaggccgaggagaagagcagcaaagacgacaaggccaaa
gccggcaacggggagccagcggagccatccagggagagagacgccgtcaaggactccaag
agcaaggagaaaggagagaggggcgctgtggccgggaccctcaagtcaccagttcccaga
tctgagtcagccgaatctgagagggatcacaaaagacgaaagctcgacagtcactcctct
ccgtcccactcctcgtctgttaaggacaataacaacgaacccaaggagaccacatccaag
caccacgtcacctacaattcagtagcccggtccaagagcagagagagggagacggagaag
aaagattcagacaacacacaaggccgatccaaagaaaagaaggaagaaaaggatcggaaa
gaaaggaaaagagaccatgctgtcaatgaccgcgaggcgagccaagaaaccaaacgtaaa
aaggatgagaatggaaccaattcctccaaaaacagcaggagcacgagtccttcctgtgac
tcgccgctttcagctgaaaaagagaagagcaaaagacccaaatcttcaagtaaagagaaa
gccgacgctgtgaaacctgagcggacgtcctctggaggcaaaaaggagtcccgacacgat
aaggagaaatctgaaaagaaagagaagagggacgcctccggagggaaggaagagaaaaag
catcataaatcctctgacaagcacagataa
DBGET
integrated database retrieval system
